T3 Wheat Sandbox

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Breeders Datafarm Data

The Wheat Breeders Datafarm has been retired. Each of the 884 phenotype trials have been copied across to T3/Wheat.

Data Analysis Tools

BLAST Search updated to NCBI BLAST 2.6 and the latest wheat assemblies

GWAS Results updated to include Wheat Expression Browser: expVIP.

Wheat CAP exome capture data

Genotype data is now available for all of the parents of the bi-parental families being used for fine mapping of yield component QTL in the Wheat CAP project.

Trait basal aborted spikelets per head

Phenotypes name	basal aborted spikelets per head
Alternate name	BASALABTDSKLTS
Description	Hypoplasy and abortion in the basal spikelets. Aborted spikelets appear undeveloped and no grains are produced.
TO number	TO:0000436
Datatype	numeric
Max pheno value	10
Min pheno value	0
Updated on	2016-10-11 11:33:21

Phenotype Categories

Phenotype Category Name
Agronomic	View

Units

Unit Name
0-10	View

Available Datasets for this Phenotype

Year	Trial Name	Traits
2012	SW-AMPanel_2012_Davis_Dry	basal aborted spikelets per head,canopy senescence score T1,canopy senescence score T2,canopy senescence score T3,canopy senescence score T4,canopy senescence score T5,canopy senescence score T6,canopy senescence score T7,flag leaf angle,flag leaf angle T1,flag leaf chlorophyll content,flag leaf chlorophyll content T1,flag leaf chlorophyll content T2,flag leaf length,flag leaf width,flowering date,grain number,grain number per spikelet,grain yield,grain yield (main tillers),heading date,leaf chlorophyll content,lodging incidence,lodging incidence Z55,maturity date (canopy),maturity date (physiological),maturity date (spikes),peduncle length,plant height,plot shattering,spike length,spikelets per head,stem diameter,stripe rust severity,test weight,thousand kernel weight,thousand kernel weight (main tillers),waxiness,whole grain protein
2012	SW-AMPanel_2012_Davis_Irr	basal aborted spikelets per head,canopy senescence score T1,canopy senescence score T2,canopy senescence score T3,canopy senescence score T4,canopy senescence score T5,canopy senescence score T6,canopy senescence score T7,flag leaf angle,flag leaf angle T1,flag leaf chlorophyll content,flag leaf chlorophyll content T1,flag leaf chlorophyll content T2,flag leaf length,flag leaf width,flowering date,grain number,grain number per spikelet,grain yield,grain yield (main tillers),heading date,leaf chlorophyll content,lodging incidence,lodging incidence Z50,maturity date (canopy),maturity date (physiological),maturity date (spikes),peduncle length,plant height,plot shattering,spike length,spikelets per head,stem diameter,test weight,thousand kernel weight,thousand kernel weight (main tillers),waxiness,waxiness (spikes),whole grain protein
2013	HWWpanel_2013_FortCollins_Dry	basal aborted spikelets per head,biomass at maturity,flowering date,grain fill duration,grain weight,grain yield,harvest index,heading date,maturity date (physiological),plant height,seeds per head,spike length,spikelets per head,thousand kernel weight
2013	HWWpanel_2013_FortCollins_Irr	basal aborted spikelets per head,biomass at maturity,flowering date,grain fill duration,grain weight,grain yield,harvest index,heading date,maturity date (physiological),plant height,seeds per head,spike length,spikelets per head,thousand kernel weight

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

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