T3 Wheat Sandbox

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What's New

Breeders Datafarm Data

The Wheat Breeders Datafarm has been retired. Each of the 884 phenotype trials have been copied across to T3/Wheat.

Data Analysis Tools

BLAST Search updated to NCBI BLAST 2.6 and the latest wheat assemblies

GWAS Results updated to include Wheat Expression Browser: expVIP.

Wheat CAP exome capture data

Genotype data is now available for all of the parents of the bi-parental families being used for fine mapping of yield component QTL in the Wheat CAP project.

Gene Annotation TraesCS2D02G307600

Gene id	TraesCS2D02G307600
Transcript	TraesCS2D02G307600.1
Gene name
Type
Gene reference	Ensembl Plant
Assembly name	7
Description	Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A1D5UKY6] Auxin response factor
Start	394536026
Stop	394541495
Bin	2D
Uniprot	A0A1D5UKY6 A0A1D5UKY7
Goa	A0A1D5UKY6 auxin-activated signaling pathway [GO:0009734]; regulation of transcription, DNA-templated [GO:0006355]
Function	IPR000270:PB1 domain IPR003340:B3 DNA binding domain IPR010525:Auxin response factor IPR015300:DNA-binding pseudobarrel domain superfamily IPR033389:AUX/IAA domain
Updated on	2020-01-24 08:51:10

JBrowse		TraesCS2D02G307600
Pathway	Hormone signaling, transport, and metabolism	Pathway
Pathway	Metabolism and regulation	Pathway
Pathway	Auxin signalling	Pathway
Pathway	Growth and developmental processes	Pathway
Pathway	Reproductive structure development	Pathway
Pathway	Regulation of seed size	Pathway
Pathway	Seed development	Pathway

Markers near this gene

Marker	distance
D_contig10690_305	0

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

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