T3 Wheat Sandbox

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What's New

Breeders Datafarm Data

The Wheat Breeders Datafarm has been retired. Each of the 884 phenotype trials have been copied across to T3/Wheat.

Data Analysis Tools

BLAST Search updated to NCBI BLAST 2.6 and the latest wheat assemblies

GWAS Results updated to include Wheat Expression Browser: expVIP.

Wheat CAP exome capture data

Genotype data is now available for all of the parents of the bi-parental families being used for fine mapping of yield component QTL in the Wheat CAP project.

Gene Annotation TraesCS7A02G160800

Gene id	TraesCS7A02G160800
Transcript	TraesCS7A02G160800.2
Gene name
Type
Gene reference	Ensembl Plant
Assembly name	7
Description	Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A341XR18]
Start	116871592
Stop	116878338
Bin	7A
Uniprot	A0A1D6SD21 A0A1D6D0F5 A0A1D6D0F4 A0A1D5VAX8
Goa
Function	IPR000270:PB1 domain IPR003340:B3 DNA binding domain IPR010525:Auxin response factor IPR015300:DNA-binding pseudobarrel domain superfamily IPR033389:AUX/IAA domain
Updated on	2020-01-24 08:51:10

JBrowse		TraesCS7A02G160800
Pathway	Hormone signaling, transport, and metabolism	Pathway
Pathway	Metabolism and regulation	Pathway
Pathway	Auxin signalling	Pathway
Pathway	Growth and developmental processes	Pathway
Pathway	Reproductive structure development	Pathway
Pathway	Regulation of seed size	Pathway
Pathway	Seed development	Pathway

Markers near this gene

Marker	distance
IWA7460	0
Excalibur_c48378_163	0
Ku_c18027_1991	0
Ra_c107347_2241	0
RAC875_rep_c76772_850	0

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.