T3 Wheat Sandbox

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What's New

Breeders Datafarm Data

The Wheat Breeders Datafarm has been retired. Each of the 884 phenotype trials have been copied across to T3/Wheat.

Data Analysis Tools

BLAST Search updated to NCBI BLAST 2.6 and the latest wheat assemblies

GWAS Results updated to include Wheat Expression Browser: expVIP.

Wheat CAP exome capture data

Genotype data is now available for all of the parents of the bi-parental families being used for fine mapping of yield component QTL in the Wheat CAP project.

Gene Annotation TraesCS5A02G382600

Gene id	TraesCS5A02G382600
Transcript	TraesCS5A02G382600.1
Gene name
Type
Gene reference	Ensembl Plant
Assembly name	7
Description	Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:Q7XTK5] Auxin-responsive protein
Start	580464947
Stop	580467685
Bin	5A
Uniprot	Q7XTK5 A0A1D5YIL0
Goa	Q7XTK5 auxin-activated signaling pathway [GO:0009734]; regulation of transcription, DNA-templated [GO:0006355]
Function	IPR000270:PB1 domain IPR003311:AUX/IAA protein IPR033389:AUX/IAA domain
Updated on	2020-01-24 08:51:10

JBrowse		TraesCS5A02G382600
Pathway	Hormone signaling, transport, and metabolism	Pathway
Pathway	Metabolism and regulation	Pathway
Pathway	Auxin signalling	Pathway
Pathway	Growth and developmental processes	Pathway
Pathway	Reproductive structure development	Pathway
Pathway	Regulation of seed size	Pathway
Pathway	Seed development	Pathway

Markers near this gene

Marker	distance
BS00067170_51	20544
synopGBS115260	3032
gbsHWWAMP31550	3031
gbsHWWAMP41209	88952

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

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