T3 Wheat Sandbox

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What's New

Breeders Datafarm Data

The Wheat Breeders Datafarm has been retired. Each of the 884 phenotype trials have been copied across to T3/Wheat.

Data Analysis Tools

BLAST Search updated to NCBI BLAST 2.6 and the latest wheat assemblies

GWAS Results updated to include Wheat Expression Browser: expVIP.

Wheat CAP exome capture data

Genotype data is now available for all of the parents of the bi-parental families being used for fine mapping of yield component QTL in the Wheat CAP project.

Gene Annotation TraesCS4A02G486100

Gene id	TraesCS4A02G486100
Transcript	TraesCS4A02G486100.1
Gene name
Type
Gene reference	Ensembl Plant
Assembly name	7
Description
Start	739520989
Stop	739525939
Bin	4A
Uniprot	A0A341TVQ0
Goa
Function	IPR001117:Multicopper oxidase, type 1 IPR008972:Cupredoxin IPR011706:Multicopper oxidase, type 2 IPR011707:Multicopper oxidase, type 3 IPR034273:Ascorbate oxidase homologue, first cupredoxin domain
Updated on	2020-01-24 08:51:10

JBrowse		TraesCS4A02G486100
Pathway	Hormone signaling, transport, and metabolism	Pathway
Pathway	Metabolism and regulation	Pathway
Pathway	Auxin signalling	Pathway
Pathway	Growth and developmental processes	Pathway
Pathway	Reproductive structure development	Pathway
Pathway	Regulation of seed size	Pathway
Pathway	Seed development	Pathway

Markers near this gene

Marker	distance
CAP12_c921_92	0
RAC875_c11702_1015	0
RAC875_c11702_1216	0
Tdurum_contig9444_1358	0
IWA3422	0
Excalibur_c33012_132	0
RAC875_c11702_1419	0
gbsHWWAMP17668	11619

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.