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  T3/Oat Sandbox

Genotyping experiment SDSU_2017_GBS

Description

Experiment Short NameSouth Dakota State University GBS
PlatformGBS PstI-MspI
Data ProgramUSDA-ARS Fargo: data (FND-GD)
Breeding ProgramSouth Dakota State University (SDS)
OPA Namen/a
Processing Date3/16/17
SoftwareHaplotag
Software version2016_02
CommentsSNPs interpreted from haplotype calls

239667 markers were assayed for 252 lines.

(lines and markers)

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Removed by filteringRemaining
90711 markers have a minor allele frequency (MAF) less than 5%
201943 markers are missing more than 10% of data
214016 markers removed
25651 markers

Maximum Missing Data: %     Minimum MAF: %    



Additional files available

Samples (germplasm lines)
Manifest (markers used)
Cluster File
Raw data

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

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