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Genotyping experiment POGI_2019

Description

Experiment Short NamePOGI_2019
PlatformGBS PstI-MspI
Data ProgramAAFC Ottawa: genotype data (OTW-GD)
Breeding ProgramAAFC Ottawa (OTW)
OPA Name
Processing Date12/1/19
SoftwareHaplotag
Software version2019
Commentsre-called CORE

240958 markers were assayed for 635 lines.

(lines and markers)

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Removed by filteringRemaining
42166 markers have a minor allele frequency (MAF) less than 5%
227184 markers are missing more than 10% of data
230012 markers removed
10946 markers

Maximum Missing Data: %     Minimum MAF: %    



Additional files available

Samples (germplasm lines)
Manifest (markers used)
Cluster File
Raw datacore_haplotag_2019.hmp

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

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