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  T3/Oat Sandbox

Genotyping experiment NSGC_2014_Infinium

Description

Experiment Short NameNSGC_Infinium
PlatformInfinium
Data ProgramUSDA-ARS Fargo: data (FND-GD)
Breeding ProgramNSGC Oat (NSG)
OPA NameOat6K
Processing Date8/1/14
SoftwareIllumina Genome Studio; Illuminizer
Software version2011.1
Comments

3776 markers were assayed for 990 lines.

(lines and markers)

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Removed by filteringRemaining
659 markers have a minor allele frequency (MAF) less than 5%
124 markers are missing more than 10% of data
770 markers removed
3006 markers

Maximum Missing Data: %     Minimum MAF: %    



Additional files available

Samples (germplasm lines)
Manifest (markers used)
Cluster File
Raw data

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.