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Genotyping experiment CornellMetabolomics_2016

Description

Experiment Short NameMetabolomics_CUA
PlatformGBS PstI-MspI
Data ProgramUSDA-ARS Fargo: data (FND-GD)
Breeding ProgramCornell University (CUA)
OPA Namenone
Processing Date1/1/17
SoftwareHaplotag
Software version2016_02
Comments

239424 markers were assayed for 1010 lines.

(lines and markers)

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Removed by filteringRemaining
56687 markers have a minor allele frequency (MAF) less than 5%
222641 markers are missing more than 10% of data
227315 markers removed
12109 markers

Maximum Missing Data: %     Minimum MAF: %    



Additional files available

Samples (germplasm lines)CbyTTaxa.txt
Manifest (markers used)
Cluster File
Raw dataHTSNPGenos.txt

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.