Contact Us

  T3/Oat Sandbox

Genotyping experiment CORE_2014_GBS

Description

Experiment Short NameCORE_GBS
PlatformHiSeq
Data ProgramAAFC Ottawa: genotype data (OTW-GD)
Breeding ProgramUnknown (UNK)
OPA Namen/a
Processing Date5/3/15
SoftwareTASSEL/UNEAK
Software version3
CommentsGBS data called by UNEAK on 635 CORE diversity lines, filtered at >= 95% completeness, >= 1% MAF, >= 5% heterozygous.

2635 markers were assayed for 635 lines.

(lines and markers)

Download

Removed by filteringRemaining
821 markers have a minor allele frequency (MAF) less than 5%
0 markers are missing more than 10% of data
821 markers removed
1814 markers

Maximum Missing Data: %     Minimum MAF: %    



Additional files available

Samples (germplasm lines)
Manifest (markers used)
Cluster File
Raw data

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.