T3 Barley Sandbox

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What's New

Phenotype data
Six additional phenotype trials from the North American Barley Scab Evaluation Nursery (NABSEN) have now been uploaded from Fargo, ND, and Langdon, ND (2014-2016).
Data Selection
Physical Map added for IBSC 2016 assembly.
Data Analysis Tools
BLAST database and JBrowse for IBSC 2016 assembly.
GWAS results updated to include EMBL-EBI expression data.
GWAS results updated to include Plant Reactome Pathways

Allele Conflicts by Markers

Also see conflicts by line, conflicts by experiment, and All Allele Conflicts.

Top 100 conflicts
Select the link for each marker name to view the conflicts between experiments and by line.
Total measured is the number of lines with genotype data for this marker.

marker name	total measured	conflicts	percent conflicts
11_10150	9086	244	2.69
11_10064	19663	216	1.1
12_30230	8594	215	2.5
11_20225	8854	199	2.25
SCRI_RS_218200	4527	197	4.35
SCRI_RS_221886	4527	193	4.26
SCRI_RS_106799	4527	187	4.13
SCRI_RS_206867	4527	185	4.09
SCRI_RS_132599	4527	184	4.06
12_30441	8594	182	2.12
11_21348	9085	181	1.99
SCRI_RS_217123	2823	180	6.38
11_10338	11663	180	1.54
11_10584	9086	178	1.96
11_21447	8870	175	1.97
SCRI_RS_119312	4527	173	3.82
SCRI_RS_226221	3899	172	4.41
SCRI_RS_152388	4527	171	3.78
BK_07	4527	166	3.67
SCRI_RS_151716	4527	165	3.64
SCRI_RS_12723	4527	164	3.62
11_20008	9060	164	1.81
SCRI_RS_149877	4527	162	3.58
11_11239	16381	160	0.98
11_20971	9085	157	1.73
SCRI_RS_194653	4527	156	3.45
12_30308	8594	156	1.82
SCRI_RS_139987	4527	156	3.45
SCRI_RS_188340	4527	155	3.42
12_30575	8594	154	1.79
11_10092	10100	154	1.52
SCRI_RS_181370	3683	153	4.15
11_21140	12620	152	1.2
12_30972	8594	150	1.75
SCRI_RS_170159	4527	150	3.31
11_11480	8855	150	1.69
SCRI_RS_208760	3873	149	3.85
SCRI_RS_194036	4311	149	3.46
SCRI_RS_166323	4527	149	3.29
SCRI_RS_194453	4527	148	3.27
SCRI_RS_200057	4527	147	3.25
11_21024	17141	146	0.85
SCRI_RS_147342	4311	145	3.36
11_10128	11607	144	1.24
SCRI_RS_184784	4527	144	3.18
SCRI_RS_116575	4527	143	3.16
SCRI_RS_160512	4527	142	3.14
SCRI_RS_12516	4527	141	3.11
11_20497	8870	141	1.59
SCRI_RS_132017	4527	140	3.09
SCRI_RS_132345	4527	140	3.09
SCRI_RS_3287	4501	137	3.04
11_21168	9085	135	1.49
SCRI_RS_211943	4527	134	2.96
11_21272	25653	134	0.52
SCRI_RS_214028	4311	133	3.09
11_20805	8854	132	1.49
SCRI_RS_155997	4527	132	2.92
11_11031	9086	132	1.45
SCRI_RS_182555	4527	131	2.89
SCRI_RS_159021	3899	131	3.36
11_20324	8360	131	1.57
SCRI_RS_195051	4311	129	2.99
11_10635	9086	129	1.42
SCRI_RS_170235	4527	128	2.83
SCRI_RS_127968	4311	127	2.95
SCRI_RS_192386	4527	126	2.78
11_21405	8870	125	1.41
SCRI_RS_231244	4311	125	2.9
SCRI_RS_13952	4432	124	2.8
SCRI_RS_136586	4527	124	2.74
SCRI_RS_182947	4311	124	2.88
11_10028	9086	123	1.35
SCRI_RS_175771	4527	122	2.69
12_30117	9492	122	1.29
SCRI_RS_193506	4432	122	2.75
11_10239	12509	121	0.97
SCRI_RS_131936	4527	121	2.67
12_10487	8653	120	1.39
SCRI_RS_171198	4527	120	2.65
12_10362	8653	119	1.38
SCRI_RS_217794	4311	119	2.76
11_10075	14063	118	0.84
SCRI_RS_111312	4527	118	2.61
SCRI_RS_146959	4527	118	2.61
SCRI_RS_161414	4311	117	2.71
12_30995	8594	117	1.36
11_10721	12621	117	0.93
SCRI_RS_158091	3899	116	2.98
SCRI_RS_106140	4527	115	2.54
12_30445	15889	115	0.72
11_11040	18368	114	0.62
SCRI_RS_3114	4527	113	2.5
SCRI_RS_133377	3899	113	2.9
11_10307	10079	111	1.1
SCRI_RS_151617	4527	111	2.45
SCRI_RS_184857	4527	111	2.45
SCRI_RS_193756	3453	110	3.19
SCRI_RS_159441	4527	110	2.43
SCRI_RS_197256	4311	109	2.53

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.