T3 Barley Sandbox

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What's New

Phenotype data
Six additional phenotype trials from the North American Barley Scab Evaluation Nursery (NABSEN) have now been uploaded from Fargo, ND, and Langdon, ND (2014-2016).
Data Selection
Physical Map added for IBSC 2016 assembly.
Data Analysis Tools
BLAST database and JBrowse for IBSC 2016 assembly.
GWAS results updated to include EMBL-EBI expression data.
GWAS results updated to include Plant Reactome Pathways

Also see conflicts by experiment, conflicts by marker, and All Allele Conflicts.

Allele Conflicts for VERBESSERTER_RIED between experiments

Each entry has number of conflicts / comparisons (percent conflicts).

	2011_9K_NB_allplates	2018_CCRU_50K
2011_9K_NB_allplates	0/6913 (0%)
2018_CCRU_50K	105/6012 (2%)	0/43577 (0%)

Allele Conflicts for VERBESSERTER_RIED sorted by marker name

marker name	2011_9K_NB_allplates	2018_CCRU_50K
11_10028	AA	AB
11_10064	AA	AB
11_10075	BB	AB
11_10092	BB	AB
11_10112	AA	AB
11_10128	AA	AB
11_10150	BB	AB
11_11031	AA	AB
11_20099	AA	AB
11_20188	BB	AB
11_20225	AA	AB
11_20497	BB	AB
11_20805	AA	AB
11_20971	AA	AB
11_21140	AA	AB
11_21168	AA	AB
11_21348	AA	AB
11_21405	AA	AB
11_21447	AA	AB
12_11318	AA	AB
12_30230	AA	AB
12_30308	AA	AB
12_30575	AA	AB
12_30927	BB	AB
BK_07	AA	AB
BK_17	BB	AB
SCRI_RS_102837	BB	AB
SCRI_RS_106799	AA	AB
SCRI_RS_111820	AA	AB
SCRI_RS_114549	AA	AB
SCRI_RS_12516	BB	AB
SCRI_RS_12723	AA	AB
SCRI_RS_127968	AA	AB
SCRI_RS_132017	BB	AB
SCRI_RS_133377	BB	AB
SCRI_RS_134956	AA	AB
SCRI_RS_13639	AA	AB
SCRI_RS_136586	AA	AB
SCRI_RS_139193	BB	AB
SCRI_RS_139987	AA	AB
SCRI_RS_147278	AA	AB
SCRI_RS_147342	BB	AB
SCRI_RS_149877	AA	AB
SCRI_RS_151617	AA	AB
SCRI_RS_151764	AA	AB
SCRI_RS_152388	AA	AB
SCRI_RS_156090	BB	AB
SCRI_RS_159021	AA	AB
SCRI_RS_159441	BB	AB
SCRI_RS_159555	BB	AB
SCRI_RS_160512	BB	AB
SCRI_RS_161349	AA	AB
SCRI_RS_161702	AA	AB
SCRI_RS_164726	AA	AB
SCRI_RS_166323	AA	AB
SCRI_RS_166540	BB	AB
SCRI_RS_167383	AA	AB
SCRI_RS_170235	AA	AB
SCRI_RS_170388	AA	AB
SCRI_RS_172665	AA	AB
SCRI_RS_173145	BB	AB
SCRI_RS_174699	BB	AB
SCRI_RS_179958	AA	AB
SCRI_RS_180871	AA	AB
SCRI_RS_181370	BB	AB
SCRI_RS_182555	AA	AB
SCRI_RS_182947	AA	AB
SCRI_RS_184784	BB	AB
SCRI_RS_184857	AA	AB
SCRI_RS_187590	AA	AB
SCRI_RS_188340	AA	AB
SCRI_RS_189409	BB	AB
SCRI_RS_189465	AA	AB
SCRI_RS_190401	BB	AB
SCRI_RS_192386	AA	AB
SCRI_RS_194453	BB	AB
SCRI_RS_194653	BB	AB
SCRI_RS_195216	AA	AB
SCRI_RS_195226	AA	AB
SCRI_RS_196604	BB	AB
SCRI_RS_198601	AA	AB
SCRI_RS_200057	AA	AB
SCRI_RS_200512	AA	AB
SCRI_RS_204148	AA	AB
SCRI_RS_214028	AA	AB
SCRI_RS_217123	BB	AB
SCRI_RS_217794	BB	AB
SCRI_RS_218200	AA	AB
SCRI_RS_218235	BB	AB
SCRI_RS_218303	AA	AB
SCRI_RS_221945	AA	AB
SCRI_RS_221992	BB	AB
SCRI_RS_222844	AA	AB
SCRI_RS_226221	BB	AB
SCRI_RS_229673	BB	AB
SCRI_RS_231261	AA	AB
SCRI_RS_231739	AA	AB
SCRI_RS_233261	AA	AB
SCRI_RS_235055	AA	AB
SCRI_RS_3114	BB	AB
SCRI_RS_3287	AA	AB
SCRI_RS_66441	AA	AB
SCRI_RS_7940	AA	AB
SCRI_RS_89111	BB	AB
SCRI_RS_99965	BB	AB

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.