T3 Barley Sandbox

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What's New

Phenotype data
Six additional phenotype trials from the North American Barley Scab Evaluation Nursery (NABSEN) have now been uploaded from Fargo, ND, and Langdon, ND (2014-2016).
Data Selection
Physical Map added for IBSC 2016 assembly.
Data Analysis Tools
BLAST database and JBrowse for IBSC 2016 assembly.
GWAS results updated to include EMBL-EBI expression data.
GWAS results updated to include Plant Reactome Pathways

Also see conflicts by experiment, conflicts by marker, and All Allele Conflicts.

Allele Conflicts for VARUNDA between experiments

Each entry has number of conflicts / comparisons (percent conflicts).

	2011_9K_NB_allplates	2018_CCRU_50K
2011_9K_NB_allplates	0/6913 (0%)
2018_CCRU_50K	94/6030 (2%)	0/43662 (0%)

Allele Conflicts for VARUNDA sorted by marker name

marker name	2011_9K_NB_allplates	2018_CCRU_50K
11_10028	AA	AB
11_10064	AA	AB
11_10092	BB	AB
11_10128	AA	AB
11_10150	BB	AB
11_10338	AA	AB
11_10584	AA	AB
11_20008	AA	AB
11_20225	AA	AB
11_20329	AA	AB
11_20497	BB	AB
11_20940	AA	AB
11_21024	AA	AB
11_21140	AA	AB
11_21168	AA	AB
11_21271	AA	AB
11_21447	AA	AB
12_30230	AA	AB
12_30308	AA	AB
12_30441	AA	AB
12_30575	AA	AB
12_30995	BB	AB
SCRI_RS_102837	BB	AB
SCRI_RS_116575	AA	AB
SCRI_RS_12516	BB	AB
SCRI_RS_12723	AA	AB
SCRI_RS_129048	AA	AB
SCRI_RS_131897	AA	AB
SCRI_RS_132017	BB	AB
SCRI_RS_132345	AA	AB
SCRI_RS_133224	AA	AB
SCRI_RS_13972	AA	AB
SCRI_RS_140831	BB	AB
SCRI_RS_141591	AA	AB
SCRI_RS_143810	AA	AB
SCRI_RS_147342	BB	AB
SCRI_RS_151617	AA	AB
SCRI_RS_151716	AA	AB
SCRI_RS_151764	AA	AB
SCRI_RS_152388	AA	AB
SCRI_RS_157444	AA	AB
SCRI_RS_158256	AA	AB
SCRI_RS_158679	BB	AB
SCRI_RS_159021	AA	AB
SCRI_RS_159158	AA	AB
SCRI_RS_159555	BB	AB
SCRI_RS_161285	AA	AB
SCRI_RS_161414	BB	AB
SCRI_RS_161702	AA	AB
SCRI_RS_164308	BB	AB
SCRI_RS_166323	AA	AB
SCRI_RS_166511	AA	AB
SCRI_RS_166540	BB	AB
SCRI_RS_167383	AA	AB
SCRI_RS_16799	BB	AB
SCRI_RS_170235	AA	AB
SCRI_RS_173145	BB	AB
SCRI_RS_173554	AA	AB
SCRI_RS_175805	AA	AB
SCRI_RS_181370	BB	AB
SCRI_RS_182555	AA	AB
SCRI_RS_182947	AA	AB
SCRI_RS_186901	AA	AB
SCRI_RS_188340	AA	AB
SCRI_RS_189465	AA	AB
SCRI_RS_190002	AA	AB
SCRI_RS_190401	BB	AB
SCRI_RS_190423	BB	AB
SCRI_RS_192386	AA	AB
SCRI_RS_195051	AA	AB
SCRI_RS_196373	AA	AB
SCRI_RS_200057	AA	AB
SCRI_RS_200512	AA	AB
SCRI_RS_204148	AA	AB
SCRI_RS_204616	AA	AB
SCRI_RS_206867	BB	AB
SCRI_RS_211943	AA	AB
SCRI_RS_214028	AA	AB
SCRI_RS_217123	BB	AB
SCRI_RS_217794	BB	AB
SCRI_RS_218200	AA	AB
SCRI_RS_218235	BB	AB
SCRI_RS_221939	BB	AB
SCRI_RS_221992	BB	AB
SCRI_RS_222844	AA	AB
SCRI_RS_226221	BB	AB
SCRI_RS_231244	BB	AB
SCRI_RS_231261	AA	AB
SCRI_RS_237864	AA	AB
SCRI_RS_239569	AA	AB
SCRI_RS_3287	AA	AB
SCRI_RS_6913	BB	AB
SCRI_RS_89111	BB	AB
SCRI_RS_99965	BB	AB

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.