T3 Barley Sandbox

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What's New

Phenotype data
Six additional phenotype trials from the North American Barley Scab Evaluation Nursery (NABSEN) have now been uploaded from Fargo, ND, and Langdon, ND (2014-2016).
Data Selection
Physical Map added for IBSC 2016 assembly.
Data Analysis Tools
BLAST database and JBrowse for IBSC 2016 assembly.
GWAS results updated to include EMBL-EBI expression data.
GWAS results updated to include Plant Reactome Pathways

Also see conflicts by experiment, conflicts by marker, and All Allele Conflicts.

Allele Conflicts for TYSTOFTE between experiments

Each entry has number of conflicts / comparisons (percent conflicts).

	2011_9K_NB_allplates	2018_CCRU_50K
2011_9K_NB_allplates	0/6913 (0%)
2018_CCRU_50K	99/5965 (2%)	0/43200 (0%)

Allele Conflicts for TYSTOFTE sorted by marker name

marker name	2011_9K_NB_allplates	2018_CCRU_50K
11_10028	AA	AB
11_10064	AA	AB
11_10092	BB	AB
11_10150	BB	AB
11_10338	AA	AB
11_10584	AA	AB
11_11031	AA	AB
11_11480	AA	AB
11_20008	AA	AB
11_20195	AA	AB
11_20225	AA	AB
11_20329	AA	AB
11_20497	BB	AB
11_20730	AA	AB
11_20971	AA	AB
11_21024	AA	AB
11_21447	AA	AB
12_20187	AA	AB
12_20489	BB	AB
12_30230	AA	AB
12_30308	AA	AB
12_30371	BB	AB
12_30441	AA	AB
12_30482	AA	AB
12_30575	AA	AB
12_30817	BB	AB
12_30845	BB	AB
12_30972	AA	AB
BK_07	AA	AB
BK_15	AA	AB
SCRI_RS_112718	BB	AB
SCRI_RS_116575	AA	AB
SCRI_RS_119312	AA	AB
SCRI_RS_12516	BB	AB
SCRI_RS_12723	AA	AB
SCRI_RS_129048	AA	AB
SCRI_RS_131897	AA	AB
SCRI_RS_132345	AA	AB
SCRI_RS_133224	AA	AB
SCRI_RS_13639	AA	AB
SCRI_RS_140831	BB	AB
SCRI_RS_143810	AA	AB
SCRI_RS_144337	AA	AB
SCRI_RS_146959	AA	AB
SCRI_RS_147342	BB	AB
SCRI_RS_151716	AA	AB
SCRI_RS_152347	AA	AB
SCRI_RS_152388	AA	AB
SCRI_RS_152931	AA	AB
SCRI_RS_154081	BB	AB
SCRI_RS_158091	AA	AB
SCRI_RS_158679	BB	AB
SCRI_RS_159021	AA	AB
SCRI_RS_159441	BB	AB
SCRI_RS_159555	BB	AB
SCRI_RS_160512	BB	AB
SCRI_RS_161285	AA	AB
SCRI_RS_161414	BB	AB
SCRI_RS_164308	BB	AB
SCRI_RS_167497	AA	AB
SCRI_RS_168461	AA	AB
SCRI_RS_170235	AA	AB
SCRI_RS_173145	BB	AB
SCRI_RS_174699	BB	AB
SCRI_RS_175771	BB	AB
SCRI_RS_175805	AA	AB
SCRI_RS_181370	BB	AB
SCRI_RS_184784	BB	AB
SCRI_RS_184857	AA	AB
SCRI_RS_184894	AA	AB
SCRI_RS_186901	AA	AB
SCRI_RS_187590	AA	AB
SCRI_RS_187887	AA	AB
SCRI_RS_189409	BB	AB
SCRI_RS_190002	AA	AB
SCRI_RS_192386	AA	AB
SCRI_RS_194148	AA	AB
SCRI_RS_194453	BB	AB
SCRI_RS_194653	BB	AB
SCRI_RS_196373	AA	AB
SCRI_RS_198546	AA	AB
SCRI_RS_198601	AA	AB
SCRI_RS_200057	AA	AB
SCRI_RS_203457	AA	AB
SCRI_RS_206867	BB	AB
SCRI_RS_208760	BB	AB
SCRI_RS_214028	AA	AB
SCRI_RS_216141	BB	AB
SCRI_RS_217123	BB	AB
SCRI_RS_217794	BB	AB
SCRI_RS_218200	AA	AB
SCRI_RS_219799	AA	AB
SCRI_RS_221886	AA	AB
SCRI_RS_226221	BB	AB
SCRI_RS_237864	AB	BB
SCRI_RS_239142	AA	AB
SCRI_RS_3287	AA	AB
SCRI_RS_89111	BB	AB
SCRI_RS_9584	AA	AB

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.