T3 Barley Sandbox

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What's New

Phenotype data
Six additional phenotype trials from the North American Barley Scab Evaluation Nursery (NABSEN) have now been uploaded from Fargo, ND, and Langdon, ND (2014-2016).
Data Selection
Physical Map added for IBSC 2016 assembly.
Data Analysis Tools
BLAST database and JBrowse for IBSC 2016 assembly.
GWAS results updated to include EMBL-EBI expression data.
GWAS results updated to include Plant Reactome Pathways

Also see conflicts by experiment, conflicts by marker, and All Allele Conflicts.

Allele Conflicts for TX01D155 between experiments

Each entry has number of conflicts / comparisons (percent conflicts).

	2011_9K_NB_allplates	2018_CCRU_50K
2011_9K_NB_allplates	0/6913 (0%)
2018_CCRU_50K	95/6002 (2%)	0/43560 (0%)

Allele Conflicts for TX01D155 sorted by marker name

marker name	2011_9K_NB_allplates	2018_CCRU_50K
11_10064	AA	AB
11_10075	BB	AB
11_10150	BB	AB
11_10338	AA	AB
11_11480	AA	AB
11_20008	AA	AB
11_20805	AA	AB
11_20971	AA	AB
11_21024	AA	AB
11_21065	BB	AB
11_21348	AA	AB
11_21405	AA	AB
11_21447	AA	AB
12_10581	AA	AB
12_20368	BB	AB
12_20599	BB	AB
12_30041	AA	AB
12_30230	AA	AB
12_30308	AA	AB
12_30371	BB	AB
12_30482	AA	AB
12_30575	AA	AB
12_30845	BB	AB
12_30972	AA	AB
12_30995	BB	AB
12_31149	AA	AB
BK_07	AA	AB
SCRI_RS_106799	AA	AB
SCRI_RS_116575	AA	AB
SCRI_RS_119312	AA	AB
SCRI_RS_131936	BB	AB
SCRI_RS_132345	AA	AB
SCRI_RS_132599	AA	AB
SCRI_RS_133224	AA	AB
SCRI_RS_133377	BB	AB
SCRI_RS_137450	AA	AB
SCRI_RS_13952	AA	AB
SCRI_RS_139987	AA	AB
SCRI_RS_140831	BB	AB
SCRI_RS_141591	AA	AB
SCRI_RS_143810	AA	AB
SCRI_RS_144337	AA	AB
SCRI_RS_146959	AA	AB
SCRI_RS_149877	AA	AB
SCRI_RS_151716	AA	AB
SCRI_RS_152388	AA	AB
SCRI_RS_154081	BB	AB
SCRI_RS_155997	AA	AB
SCRI_RS_157444	AA	AB
SCRI_RS_158091	AA	AB
SCRI_RS_159441	BB	AB
SCRI_RS_159555	BB	AB
SCRI_RS_160512	BB	AB
SCRI_RS_161285	AA	AB
SCRI_RS_165449	AA	AB
SCRI_RS_166323	AA	AB
SCRI_RS_167383	AA	AB
SCRI_RS_171501	AA	BB
SCRI_RS_173459	AA	AB
SCRI_RS_175771	BB	AB
SCRI_RS_176159	AA	AB
SCRI_RS_181370	BB	AB
SCRI_RS_184784	BB	AB
SCRI_RS_187887	AA	AB
SCRI_RS_188420	AA	AB
SCRI_RS_188909	AA	BB
SCRI_RS_189465	AA	AB
SCRI_RS_190002	AA	AB
SCRI_RS_194036	AA	AB
SCRI_RS_194453	BB	AB
SCRI_RS_195216	AA	AB
SCRI_RS_195226	AA	AB
SCRI_RS_195810	AA	AB
SCRI_RS_198546	AA	AB
SCRI_RS_198601	AA	AB
SCRI_RS_200057	AA	AB
SCRI_RS_200389	AA	AB
SCRI_RS_204616	AA	AB
SCRI_RS_206867	BB	AB
SCRI_RS_208760	BB	AB
SCRI_RS_211943	AA	AB
SCRI_RS_214028	AA	AB
SCRI_RS_217123	BB	AB
SCRI_RS_217794	BB	AB
SCRI_RS_218200	AA	AB
SCRI_RS_219799	AA	AB
SCRI_RS_226221	BB	AB
SCRI_RS_229445	AA	AB
SCRI_RS_231244	BB	AB
SCRI_RS_231739	AA	AB
SCRI_RS_234502	AA	AB
SCRI_RS_235724	BB	AA
SCRI_RS_3114	BB	AB
SCRI_RS_3287	AA	AB
SCRI_RS_78578	AA	BB

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.