T3 Barley Sandbox

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What's New

Phenotype data
Six additional phenotype trials from the North American Barley Scab Evaluation Nursery (NABSEN) have now been uploaded from Fargo, ND, and Langdon, ND (2014-2016).
Data Selection
Physical Map added for IBSC 2016 assembly.
Data Analysis Tools
BLAST database and JBrowse for IBSC 2016 assembly.
GWAS results updated to include EMBL-EBI expression data.
GWAS results updated to include Plant Reactome Pathways

Also see conflicts by experiment, conflicts by marker, and All Allele Conflicts.

Allele Conflicts for RUBIN between experiments

Each entry has number of conflicts / comparisons (percent conflicts).

	2011_9K_NB_allplates	2018_CCRU_50K
2011_9K_NB_allplates	0/6913 (0%)
2018_CCRU_50K	107/5990 (2%)	0/43472 (0%)

Allele Conflicts for RUBIN sorted by marker name

marker name	2011_9K_NB_allplates	2018_CCRU_50K
11_10028	AA	AB
11_10064	AA	AB
11_10092	BB	AB
11_10128	AA	AB
11_10150	BB	AB
11_10329	BB	AB
11_10338	AA	AB
11_20008	AA	AB
11_20099	AA	AB
11_20225	AA	AB
11_20805	AA	AB
11_20940	AA	AB
11_20971	AA	AB
11_21140	AA	AB
11_21168	AA	AB
11_21405	AA	AB
11_21447	AA	AB
12_20867	AA	AB
12_30041	AA	AB
12_30230	AA	AB
12_30482	AA	AB
12_30575	AA	AB
12_30927	BB	AB
12_30972	AA	AB
BK_07	AA	AB
SCRI_RS_102837	BB	AB
SCRI_RS_106140	AA	AB
SCRI_RS_106142	BB	AB
SCRI_RS_109266	AA	AB
SCRI_RS_119312	AA	AB
SCRI_RS_12516	BB	AB
SCRI_RS_12723	AA	AB
SCRI_RS_127968	AA	AB
SCRI_RS_133377	BB	AB
SCRI_RS_134956	AA	AB
SCRI_RS_137450	AA	AB
SCRI_RS_13882	AA	AB
SCRI_RS_139987	AA	AB
SCRI_RS_144337	AA	AB
SCRI_RS_145388	AA	BB
SCRI_RS_147342	BB	AB
SCRI_RS_149877	AA	AB
SCRI_RS_151617	AA	AB
SCRI_RS_151764	AA	AB
SCRI_RS_152388	AA	AB
SCRI_RS_152504	AA	AB
SCRI_RS_152664	AA	AB
SCRI_RS_159441	BB	AB
SCRI_RS_161702	AA	AB
SCRI_RS_164308	BB	AB
SCRI_RS_164726	AA	AB
SCRI_RS_166323	AA	AB
SCRI_RS_166511	AA	AB
SCRI_RS_166540	BB	AB
SCRI_RS_167383	AA	AB
SCRI_RS_167755	AA	AB
SCRI_RS_169593	AA	AB
SCRI_RS_170159	AA	AB
SCRI_RS_170235	AA	AB
SCRI_RS_170388	AA	AB
SCRI_RS_173145	BB	AB
SCRI_RS_175771	BB	AB
SCRI_RS_175805	AA	AB
SCRI_RS_176159	AA	AB
SCRI_RS_179958	AA	AB
SCRI_RS_181370	BB	AB
SCRI_RS_182555	AA	AB
SCRI_RS_182947	AA	AB
SCRI_RS_186901	AA	AB
SCRI_RS_187590	AA	AB
SCRI_RS_188511	AA	AB
SCRI_RS_189409	BB	AB
SCRI_RS_189465	AA	AB
SCRI_RS_194036	AA	AB
SCRI_RS_194453	BB	AB
SCRI_RS_194653	BB	AB
SCRI_RS_195051	AA	AB
SCRI_RS_195226	AA	AB
SCRI_RS_197256	AA	AB
SCRI_RS_198148	BB	AB
SCRI_RS_198601	AA	AB
SCRI_RS_200057	AA	AB
SCRI_RS_200512	AA	AB
SCRI_RS_204148	AA	AB
SCRI_RS_204616	AA	AB
SCRI_RS_205663	AA	BB
SCRI_RS_206536	BB	AB
SCRI_RS_206867	BB	AB
SCRI_RS_208760	BB	AB
SCRI_RS_216141	BB	AB
SCRI_RS_217794	BB	AB
SCRI_RS_218200	AA	AB
SCRI_RS_218235	BB	AB
SCRI_RS_221939	BB	AB
SCRI_RS_221945	AA	AB
SCRI_RS_221992	BB	AB
SCRI_RS_222844	AA	AB
SCRI_RS_224671	AA	AB
SCRI_RS_226221	BB	AB
SCRI_RS_231244	BB	AB
SCRI_RS_231261	AA	AB
SCRI_RS_231739	AA	AB
SCRI_RS_239569	AA	AB
SCRI_RS_24545	AA	AB
SCRI_RS_2961	BB	AB
SCRI_RS_3114	BB	AB
SCRI_RS_99965	BB	AB

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.