T3 Barley Sandbox

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What's New

Phenotype data
Six additional phenotype trials from the North American Barley Scab Evaluation Nursery (NABSEN) have now been uploaded from Fargo, ND, and Langdon, ND (2014-2016).
Data Selection
Physical Map added for IBSC 2016 assembly.
Data Analysis Tools
BLAST database and JBrowse for IBSC 2016 assembly.
GWAS results updated to include EMBL-EBI expression data.
GWAS results updated to include Plant Reactome Pathways

Also see conflicts by experiment, conflicts by marker, and All Allele Conflicts.

Allele Conflicts for ROXANE between experiments

Each entry has number of conflicts / comparisons (percent conflicts).

	2011_9K_NB_allplates	2018_CCRU_50K
2011_9K_NB_allplates	0/6913 (0%)
2018_CCRU_50K	95/6034 (2%)	0/43635 (0%)

Allele Conflicts for ROXANE sorted by marker name

marker name	2011_9K_NB_allplates	2018_CCRU_50K
11_10064	AA	AB
11_10092	BB	AB
11_10128	AA	AB
11_10150	BB	AB
11_10584	AA	AB
11_10635	BB	AB
11_10995	AA	AB
11_11480	AA	AB
11_20008	AA	AB
11_20188	BB	AB
11_20324	BB	AB
11_20329	AA	AB
11_20497	BB	AB
11_21140	AA	AB
11_21168	AA	AB
11_21271	AA	AB
11_21348	AA	AB
12_30230	AA	AB
12_30308	AA	AB
12_30817	BB	AB
12_30927	BB	AB
12_30995	BB	AB
BK_17	BB	AB
SCRI_RS_116575	AA	AB
SCRI_RS_119312	AA	AB
SCRI_RS_12516	BB	AB
SCRI_RS_12723	AA	AB
SCRI_RS_127968	AA	AB
SCRI_RS_12851	AB	AA
SCRI_RS_128984	AA	AB
SCRI_RS_132017	BB	AB
SCRI_RS_132345	AA	AB
SCRI_RS_133377	BB	AB
SCRI_RS_133538	BB	AB
SCRI_RS_134017	BB	AB
SCRI_RS_13639	AA	AB
SCRI_RS_136586	AA	AB
SCRI_RS_136857	AA	AB
SCRI_RS_139762	AA	AB
SCRI_RS_141591	AA	AB
SCRI_RS_144337	AA	AB
SCRI_RS_147278	AA	AB
SCRI_RS_151617	AA	AB
SCRI_RS_151764	AA	AB
SCRI_RS_152388	AA	AB
SCRI_RS_155997	AA	AB
SCRI_RS_156276	AA	AB
SCRI_RS_159555	BB	AB
SCRI_RS_160512	BB	AB
SCRI_RS_161221	AA	AB
SCRI_RS_161349	AA	AB
SCRI_RS_161702	AA	AB
SCRI_RS_164308	BB	AB
SCRI_RS_166323	AA	AB
SCRI_RS_166540	BB	AB
SCRI_RS_167383	AA	AB
SCRI_RS_170235	AA	AB
SCRI_RS_172665	AA	AB
SCRI_RS_173145	BB	AB
SCRI_RS_174699	BB	AB
SCRI_RS_175771	BB	AB
SCRI_RS_175805	AA	AB
SCRI_RS_180871	AA	AB
SCRI_RS_181370	BB	AB
SCRI_RS_182555	AA	AB
SCRI_RS_187887	AA	AB
SCRI_RS_188340	AA	AB
SCRI_RS_190423	BB	AB
SCRI_RS_192386	AA	AB
SCRI_RS_194036	AA	AB
SCRI_RS_194453	BB	AB
SCRI_RS_194653	BB	AB
SCRI_RS_195216	AA	AB
SCRI_RS_195226	AA	AB
SCRI_RS_196604	BB	AB
SCRI_RS_199922	BB	AB
SCRI_RS_204148	AA	AB
SCRI_RS_206536	BB	AB
SCRI_RS_206867	BB	AB
SCRI_RS_214028	AA	AB
SCRI_RS_216141	BB	AB
SCRI_RS_217123	BB	AB
SCRI_RS_217794	BB	AB
SCRI_RS_218200	AA	AB
SCRI_RS_218303	AA	AB
SCRI_RS_221886	AA	AB
SCRI_RS_221992	BB	AB
SCRI_RS_222844	AA	AB
SCRI_RS_229673	BB	AB
SCRI_RS_231739	AA	AB
SCRI_RS_235055	AA	AB
SCRI_RS_3114	BB	AB
SCRI_RS_6913	BB	AB
SCRI_RS_7940	AA	AB
SCRI_RS_99965	BB	AB

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.