T3 Barley Sandbox

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What's New

Phenotype data
Six additional phenotype trials from the North American Barley Scab Evaluation Nursery (NABSEN) have now been uploaded from Fargo, ND, and Langdon, ND (2014-2016).
Data Selection
Physical Map added for IBSC 2016 assembly.
Data Analysis Tools
BLAST database and JBrowse for IBSC 2016 assembly.
GWAS results updated to include EMBL-EBI expression data.
GWAS results updated to include Plant Reactome Pathways

Also see conflicts by experiment, conflicts by marker, and All Allele Conflicts.

Allele Conflicts for REIDS_TRIUMPH between experiments

Each entry has number of conflicts / comparisons (percent conflicts).

	2011_9K_NB_allplates	2018_CCRU_50K
2011_9K_NB_allplates	0/6913 (0%)
2018_CCRU_50K	100/6012 (2%)	0/43611 (0%)

Allele Conflicts for REIDS_TRIUMPH sorted by marker name

marker name	2011_9K_NB_allplates	2018_CCRU_50K
11_10064	AA	AB
11_10075	BB	AB
11_10338	AA	AB
11_10584	AA	AB
11_11480	AA	AB
11_20225	AA	AB
11_20497	BB	AB
11_20730	AA	AB
11_20745	AA	AB
11_20805	AA	AB
11_20971	AA	AB
11_21024	AA	AB
11_21168	AA	AB
11_21447	AA	AB
12_30230	AA	AB
12_30371	BB	AB
12_30441	AA	AB
12_30482	AA	AB
12_30575	AA	AB
12_30972	AA	AB
12_30995	BB	AB
12_31149	AA	AB
BK_07	AA	AB
SCRI_RS_102837	BB	AB
SCRI_RS_116575	AA	AB
SCRI_RS_119312	AA	AB
SCRI_RS_12396	BB	AB
SCRI_RS_12516	BB	AB
SCRI_RS_125793	AA	AB
SCRI_RS_129048	AA	AB
SCRI_RS_131897	AA	AB
SCRI_RS_132017	BB	AB
SCRI_RS_132345	AA	AB
SCRI_RS_134017	BB	AB
SCRI_RS_13882	AA	AB
SCRI_RS_139987	AA	AB
SCRI_RS_140831	BB	AB
SCRI_RS_141591	AA	AB
SCRI_RS_144337	AA	AB
SCRI_RS_147278	AA	AB
SCRI_RS_149877	AA	AB
SCRI_RS_151617	AA	AB
SCRI_RS_151716	AA	AB
SCRI_RS_152347	AA	AB
SCRI_RS_152388	AA	AB
SCRI_RS_153154	AA	AB
SCRI_RS_154081	BB	AB
SCRI_RS_159021	AA	AB
SCRI_RS_159158	AA	AB
SCRI_RS_159441	BB	AB
SCRI_RS_160512	BB	AB
SCRI_RS_161702	AA	AB
SCRI_RS_166323	AA	AB
SCRI_RS_166511	AA	AB
SCRI_RS_167383	AA	AB
SCRI_RS_170235	AA	AB
SCRI_RS_173145	BB	AB
SCRI_RS_173459	AA	AB
SCRI_RS_175771	BB	AB
SCRI_RS_181370	BB	AB
SCRI_RS_182555	AA	AB
SCRI_RS_184784	BB	AB
SCRI_RS_187887	AA	AB
SCRI_RS_188340	AA	AB
SCRI_RS_189465	AA	AB
SCRI_RS_190401	BB	AB
SCRI_RS_190418	BB	AB
SCRI_RS_190423	BB	AB
SCRI_RS_194036	AA	AB
SCRI_RS_194453	BB	AB
SCRI_RS_194653	BB	AB
SCRI_RS_195051	AA	AB
SCRI_RS_195216	AA	AB
SCRI_RS_196373	AA	AB
SCRI_RS_198601	AA	AB
SCRI_RS_199922	BB	AB
SCRI_RS_200057	AA	AB
SCRI_RS_200512	AA	AB
SCRI_RS_204616	AA	AB
SCRI_RS_205663	AA	BB
SCRI_RS_206536	BB	AB
SCRI_RS_206867	BB	AB
SCRI_RS_208760	BB	AB
SCRI_RS_214028	AA	AB
SCRI_RS_216141	BB	AB
SCRI_RS_217123	BB	AB
SCRI_RS_218200	AA	AB
SCRI_RS_218303	AA	AB
SCRI_RS_221886	AA	AB
SCRI_RS_221945	AA	AB
SCRI_RS_226221	BB	AB
SCRI_RS_231244	BB	AB
SCRI_RS_231261	AA	AB
SCRI_RS_234502	AA	AB
SCRI_RS_239142	AA	AB
SCRI_RS_239569	AA	AB
SCRI_RS_6913	BB	AB
SCRI_RS_89111	BB	AB
SCRI_RS_9584	AA	AB
SCRI_RS_99965	BB	AB

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.