T3 Barley Sandbox

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What's New

Phenotype data
Six additional phenotype trials from the North American Barley Scab Evaluation Nursery (NABSEN) have now been uploaded from Fargo, ND, and Langdon, ND (2014-2016).
Data Selection
Physical Map added for IBSC 2016 assembly.
Data Analysis Tools
BLAST database and JBrowse for IBSC 2016 assembly.
GWAS results updated to include EMBL-EBI expression data.
GWAS results updated to include Plant Reactome Pathways

Also see conflicts by experiment, conflicts by marker, and All Allele Conflicts.

Allele Conflicts for REGENT between experiments

Each entry has number of conflicts / comparisons (percent conflicts).

	2011_9K_NB_allplates	2018_CCRU_50K
2011_9K_NB_allplates	0/6913 (0%)
2018_CCRU_50K	143/5762 (2%)	0/41798 (0%)

Allele Conflicts for REGENT sorted by marker name

marker name	2011_9K_NB_allplates	2018_CCRU_50K
11_10064	AA	AB
11_10092	BB	AB
11_10150	BB	AB
11_10381	AA	AB
11_10390	AA	AB
11_10516	AA	AB
11_10584	AA	AB
11_10625	BB	AB
11_10635	AA	AB
11_10685	BB	AB
11_10721	AA	AB
11_10949	BB	AB
11_10988	AA	AB
11_20008	AA	AB
11_20099	AA	AB
11_20104	AA	AB
11_20188	BB	AB
11_20225	AA	AB
11_20497	BB	AB
11_20805	AA	AB
11_21140	AA	AB
11_21161	AA	AB
11_21191	AA	AB
11_21202	BB	AB
11_21348	AA	AB
11_21402	AA	AB
11_21405	AA	AB
12_10206	BB	AB
12_21337	AA	AB
12_30002	AA	AB
12_30064	AA	AB
12_30230	AA	AB
12_30308	AA	AB
12_30380	AA	AB
12_30575	AA	AB
12_30694	AA	AB
12_30785	AA	AB
12_30817	BB	AB
12_30927	BB	AB
12_30995	BB	AB
BK_05	BB	AB
BK_15	AA	AB
BK_17	BB	AB
SCRI_RS_102837	BB	AB
SCRI_RS_104566	AA	AB
SCRI_RS_114549	AA	AB
SCRI_RS_120672	BB	AB
SCRI_RS_12516	BB	AB
SCRI_RS_128984	AA	AB
SCRI_RS_131218	AA	AB
SCRI_RS_131897	AA	AB
SCRI_RS_132017	BB	AB
SCRI_RS_132345	AA	AB
SCRI_RS_134017	BB	AB
SCRI_RS_135425	BB	AB
SCRI_RS_139193	BB	AB
SCRI_RS_140282	AA	AB
SCRI_RS_145388	AA	AB
SCRI_RS_146093	AA	AB
SCRI_RS_147342	BB	AB
SCRI_RS_148699	AA	AB
SCRI_RS_150504	AA	AB
SCRI_RS_151617	AA	AB
SCRI_RS_151764	AA	AB
SCRI_RS_152388	AA	AB
SCRI_RS_153154	AA	AB
SCRI_RS_153166	AA	AB
SCRI_RS_153435	AA	AB
SCRI_RS_155427	BB	AB
SCRI_RS_157444	AA	AB
SCRI_RS_157728	AA	AB
SCRI_RS_158256	AA	AB
SCRI_RS_159158	AA	AB
SCRI_RS_161285	AA	AB
SCRI_RS_161702	AA	AB
SCRI_RS_164308	BB	AB
SCRI_RS_166323	AA	AB
SCRI_RS_166511	AA	AB
SCRI_RS_166540	BB	AB
SCRI_RS_167383	AA	AB
SCRI_RS_167563	AA	AB
SCRI_RS_16799	BB	AB
SCRI_RS_168461	AA	AB
SCRI_RS_168534	AA	AB
SCRI_RS_170159	AA	AB
SCRI_RS_170235	AA	AB
SCRI_RS_171008	AA	AB
SCRI_RS_172665	AA	AB
SCRI_RS_173554	AA	AB
SCRI_RS_178739	BB	AB
SCRI_RS_180871	AA	AB
SCRI_RS_181370	BB	AB
SCRI_RS_182102	AA	AB
SCRI_RS_182947	AA	AB
SCRI_RS_183580	AA	AB
SCRI_RS_184784	BB	AB
SCRI_RS_186444	AA	AB
SCRI_RS_186943	BB	AB
SCRI_RS_188340	AA	AB
SCRI_RS_188420	AA	AB
SCRI_RS_188820	AA	AB
SCRI_RS_188893	AA	AB
SCRI_RS_189790	AA	AB
SCRI_RS_190423	BB	AB
SCRI_RS_194036	AA	AB
SCRI_RS_194653	BB	AB
SCRI_RS_195051	AA	AB
SCRI_RS_195226	AA	AB
SCRI_RS_1971	AA	AB
SCRI_RS_197190	AA	AB
SCRI_RS_197256	AA	AB
SCRI_RS_199922	BB	AB
SCRI_RS_200057	AA	AB
SCRI_RS_200512	AA	AB
SCRI_RS_206536	BB	AB
SCRI_RS_206867	BB	AB
SCRI_RS_211943	AA	AB
SCRI_RS_214028	AA	AB
SCRI_RS_217123	BB	AB
SCRI_RS_217794	BB	AB
SCRI_RS_218200	AA	AB
SCRI_RS_218235	BB	AB
SCRI_RS_218303	AA	AB
SCRI_RS_221886	AA	AB
SCRI_RS_221945	AA	AB
SCRI_RS_221992	BB	AB
SCRI_RS_222844	AA	AB
SCRI_RS_224899	AA	AB
SCRI_RS_225537	BB	AB
SCRI_RS_228442	AA	AB
SCRI_RS_229174	AA	AB
SCRI_RS_229673	BB	AB
SCRI_RS_231261	AA	AB
SCRI_RS_231739	AA	AB
SCRI_RS_233901	AA	AB
SCRI_RS_235055	AA	AB
SCRI_RS_235791	BB	AB
SCRI_RS_238605	AA	AB
SCRI_RS_2961	BB	AB
SCRI_RS_3114	BB	AB
SCRI_RS_6913	BB	AB
SCRI_RS_8076	BB	AB
SCRI_RS_99965	BB	AB

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.