T3 Barley Sandbox

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What's New

Phenotype data
Six additional phenotype trials from the North American Barley Scab Evaluation Nursery (NABSEN) have now been uploaded from Fargo, ND, and Langdon, ND (2014-2016).
Data Selection
Physical Map added for IBSC 2016 assembly.
Data Analysis Tools
BLAST database and JBrowse for IBSC 2016 assembly.
GWAS results updated to include EMBL-EBI expression data.
GWAS results updated to include Plant Reactome Pathways

Also see conflicts by experiment, conflicts by marker, and All Allele Conflicts.

Allele Conflicts for QB709.5 between experiments

Each entry has number of conflicts / comparisons (percent conflicts).

	2011_9K_NB_allplates	2018_CCRU_50K
2011_9K_NB_allplates	0/6913 (0%)
2018_CCRU_50K	138/5972 (2%)	0/43322 (0%)

Allele Conflicts for QB709.5 sorted by marker name

marker name	2011_9K_NB_allplates	2018_CCRU_50K
11_10028	AA	AB
11_10064	AA	AB
11_10075	BB	AB
11_10092	BB	AB
11_10128	AA	AB
11_10150	BB	AB
11_10279	BB	AB
11_10584	AA	AB
11_10890	BB	AB
11_11239	BB	AB
11_11480	AA	AB
11_20008	AA	AB
11_20010	BB	AB
11_20121	AA	AB
11_20159	BB	AB
11_20225	AA	AB
11_20329	AA	BB
11_20497	BB	AB
11_20730	AA	AB
11_20745	AA	AB
11_20851	BB	AA
11_20920	BB	AA
11_20971	AA	AB
11_21024	AA	AB
11_21348	AA	AB
11_21447	AA	AB
12_10581	AA	AB
12_11154	BB	AA
12_20187	AA	AB
12_30137	BB	AA
12_30230	AA	AB
12_30308	AA	AB
12_30367	BB	AA
12_30371	BB	AB
12_30441	AA	AB
12_30450	AA	AB
12_30482	AA	AB
12_30575	AA	AB
12_30591	AA	AB
12_30845	BB	AB
12_31023	AA	AB
12_31149	AA	AB
SCRI_RS_10016	BB	AA
SCRI_RS_106140	AA	AB
SCRI_RS_106142	BB	AB
SCRI_RS_106728	AA	BB
SCRI_RS_106799	AA	AB
SCRI_RS_113112	BB	AA
SCRI_RS_115755	BB	AA
SCRI_RS_116575	AA	AB
SCRI_RS_119312	AA	AB
SCRI_RS_12396	BB	AB
SCRI_RS_125793	AA	AB
SCRI_RS_129048	AA	AB
SCRI_RS_131897	AA	AB
SCRI_RS_131936	BB	AB
SCRI_RS_132345	AA	AB
SCRI_RS_132599	AA	AB
SCRI_RS_13952	AA	AB
SCRI_RS_139987	AA	AB
SCRI_RS_141591	AA	AB
SCRI_RS_143810	AA	AB
SCRI_RS_143952	AA	AB
SCRI_RS_144559	BB	AA
SCRI_RS_145343	AA	AB
SCRI_RS_146959	AA	AB
SCRI_RS_147811	AA	AB
SCRI_RS_149877	AA	AB
SCRI_RS_151716	AA	AB
SCRI_RS_151868	AA	AB
SCRI_RS_152347	AA	AB
SCRI_RS_152388	AA	AB
SCRI_RS_156208	BB	AB
SCRI_RS_158091	AA	AB
SCRI_RS_159021	AA	AB
SCRI_RS_159441	BB	AB
SCRI_RS_159555	BB	AB
SCRI_RS_161285	AA	AB
SCRI_RS_162863	AA	BB
SCRI_RS_164726	AA	AB
SCRI_RS_165449	AA	AB
SCRI_RS_166168	AA	AB
SCRI_RS_166323	AA	AB
SCRI_RS_167698	BB	AA
SCRI_RS_172351	AA	AB
SCRI_RS_173459	AA	AB
SCRI_RS_174699	BB	AB
SCRI_RS_175682	BB	AA
SCRI_RS_175771	BB	AB
SCRI_RS_176159	AA	AB
SCRI_RS_177313	BB	AA
SCRI_RS_181370	BB	AB
SCRI_RS_184784	BB	AB
SCRI_RS_186901	AA	AB
SCRI_RS_187887	AA	AB
SCRI_RS_188420	AA	AB
SCRI_RS_188909	AA	AB
SCRI_RS_189465	AA	AB
SCRI_RS_190002	AA	AB
SCRI_RS_190418	BB	AB
SCRI_RS_192386	AA	AB
SCRI_RS_193756	AA	AB
SCRI_RS_194036	AA	AB
SCRI_RS_194453	BB	AB
SCRI_RS_195051	AA	AB
SCRI_RS_195200	BB	AB
SCRI_RS_196373	AA	AB
SCRI_RS_198546	AA	AB
SCRI_RS_198601	AA	AB
SCRI_RS_198883	AA	AB
SCRI_RS_200057	AA	AB
SCRI_RS_200389	AA	AB
SCRI_RS_201075	AA	AB
SCRI_RS_201224	BB	AA
SCRI_RS_203457	AA	AB
SCRI_RS_204462	AA	BB
SCRI_RS_204616	AA	AB
SCRI_RS_205592	AA	BB
SCRI_RS_205663	AA	AB
SCRI_RS_206867	BB	AB
SCRI_RS_206881	BB	AA
SCRI_RS_208297	BB	AA
SCRI_RS_208760	BB	AB
SCRI_RS_209285	AA	BB
SCRI_RS_211943	AA	AB
SCRI_RS_213950	BB	AA
SCRI_RS_214028	AA	AB
SCRI_RS_217123	BB	AB
SCRI_RS_217794	BB	AB
SCRI_RS_218200	AA	AB
SCRI_RS_219799	AA	AB
SCRI_RS_221886	AA	AB
SCRI_RS_231244	BB	AB
SCRI_RS_231382	AA	BB
SCRI_RS_236623	BB	AB
SCRI_RS_239142	AA	AB
SCRI_RS_89111	BB	AB
SCRI_RS_99965	BB	AB

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.