T3 Barley Sandbox

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What's New

Phenotype data
Six additional phenotype trials from the North American Barley Scab Evaluation Nursery (NABSEN) have now been uploaded from Fargo, ND, and Langdon, ND (2014-2016).
Data Selection
Physical Map added for IBSC 2016 assembly.
Data Analysis Tools
BLAST database and JBrowse for IBSC 2016 assembly.
GWAS results updated to include EMBL-EBI expression data.
GWAS results updated to include Plant Reactome Pathways

Also see conflicts by experiment, conflicts by marker, and All Allele Conflicts.

Allele Conflicts for Q21861 between experiments

Each entry has number of conflicts / comparisons (percent conflicts).

	2011_9K_NB_allplates	2018_CCRU_50K
2011_9K_NB_allplates	0/6913 (0%)
2018_CCRU_50K	105/5982 (2%)	0/43254 (0%)

Allele Conflicts for Q21861 sorted by marker name

marker name	2011_9K_NB_allplates	2018_CCRU_50K
11_10064	AA	AB
11_10128	AA	AB
11_10150	BB	AB
11_10338	AA	AB
11_10584	AA	AB
11_10635	AA	AB
11_10778	AB	AA
11_10995	AA	AB
11_11239	BB	AB
11_11480	AA	AB
11_20099	AA	AB
11_20225	AA	AB
11_20497	BB	AB
11_20805	AA	AB
11_20971	AA	AB
11_21024	AA	AB
11_21140	AA	AB
11_21168	AA	AB
11_21348	AA	AB
11_21405	AA	AB
12_30230	AA	AB
12_30308	AA	AB
12_30441	AA	AB
12_30482	AA	AB
12_30927	BB	AB
12_30995	BB	AB
12_30997	AA	AB
BK_07	AA	AB
SCRI_RS_102837	BB	AB
SCRI_RS_112718	BB	AB
SCRI_RS_114549	AA	AB
SCRI_RS_119312	AA	AB
SCRI_RS_12516	BB	AB
SCRI_RS_12723	AA	AB
SCRI_RS_127968	AA	AB
SCRI_RS_128984	AA	AB
SCRI_RS_129048	AA	AB
SCRI_RS_131897	AA	AB
SCRI_RS_131936	BB	AB
SCRI_RS_133538	BB	AB
SCRI_RS_134017	BB	AB
SCRI_RS_136857	AA	AB
SCRI_RS_13952	AA	AB
SCRI_RS_139762	AA	AB
SCRI_RS_139987	AA	AB
SCRI_RS_140282	AA	AB
SCRI_RS_143810	AA	AB
SCRI_RS_144337	AA	AB
SCRI_RS_146959	AA	AB
SCRI_RS_147342	BB	AB
SCRI_RS_151716	AA	AB
SCRI_RS_151764	AA	AB
SCRI_RS_152388	AA	AB
SCRI_RS_154081	BB	AB
SCRI_RS_156276	AA	AB
SCRI_RS_158091	AA	AB
SCRI_RS_158679	BB	AB
SCRI_RS_159158	AA	AB
SCRI_RS_159441	BB	AB
SCRI_RS_160512	BB	AB
SCRI_RS_161221	AA	BB
SCRI_RS_165449	AA	AB
SCRI_RS_166323	AA	AB
SCRI_RS_166540	BB	AB
SCRI_RS_167755	AA	AB
SCRI_RS_170388	AA	AB
SCRI_RS_173554	AA	AB
SCRI_RS_175805	AA	AB
SCRI_RS_181370	BB	AB
SCRI_RS_182555	AA	AB
SCRI_RS_182947	AA	AB
SCRI_RS_184784	BB	AB
SCRI_RS_184857	AA	AB
SCRI_RS_184894	AA	AB
SCRI_RS_187590	AA	AB
SCRI_RS_188340	AA	AB
SCRI_RS_190002	AA	AB
SCRI_RS_190423	BB	AB
SCRI_RS_192386	AA	AB
SCRI_RS_193756	AA	AB
SCRI_RS_194036	AA	AB
SCRI_RS_194453	BB	AB
SCRI_RS_195216	AA	AB
SCRI_RS_196373	AA	AB
SCRI_RS_197256	AA	AB
SCRI_RS_200389	AA	AB
SCRI_RS_200512	AA	AB
SCRI_RS_211943	AA	AB
SCRI_RS_214028	AA	AB
SCRI_RS_217794	BB	AB
SCRI_RS_218200	AA	AB
SCRI_RS_219799	AA	AB
SCRI_RS_221992	BB	AB
SCRI_RS_222844	AA	AB
SCRI_RS_222920	AA	AB
SCRI_RS_224671	AA	AB
SCRI_RS_231261	AA	AB
SCRI_RS_231739	AA	AB
SCRI_RS_234502	AA	AB
SCRI_RS_235055	AA	AB
SCRI_RS_237864	AA	AB
SCRI_RS_239142	AA	AB
SCRI_RS_3114	BB	AB
SCRI_RS_89111	BB	AB
SCRI_RS_9584	AA	AB

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.