T3 Barley Sandbox

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What's New

Phenotype data
Six additional phenotype trials from the North American Barley Scab Evaluation Nursery (NABSEN) have now been uploaded from Fargo, ND, and Langdon, ND (2014-2016).
Data Selection
Physical Map added for IBSC 2016 assembly.
Data Analysis Tools
BLAST database and JBrowse for IBSC 2016 assembly.
GWAS results updated to include EMBL-EBI expression data.
GWAS results updated to include Plant Reactome Pathways

Also see conflicts by experiment, conflicts by marker, and All Allele Conflicts.

Allele Conflicts for PI344942 between experiments

Each entry has number of conflicts / comparisons (percent conflicts).

	2011_9K_NB_allplates	2018_CCRU_50K
2011_9K_NB_allplates	0/6913 (0%)
2018_CCRU_50K	112/6003 (2%)	0/43523 (0%)

Allele Conflicts for PI344942 sorted by marker name

marker name	2011_9K_NB_allplates	2018_CCRU_50K
11_10028	AA	AB
11_10064	AA	AB
11_10075	BB	AB
11_10092	BB	AB
11_10128	AA	AB
11_10150	BB	AB
11_10584	AA	AB
11_10685	BB	AB
11_11031	AA	AB
11_11480	AA	AB
11_20008	AA	AB
11_20099	AA	AB
11_20497	BB	AB
11_20971	AA	AB
11_21024	AA	AB
11_21140	AA	AB
11_21271	AA	AB
11_21348	AA	AB
11_21447	AA	AB
12_30230	AA	AB
12_30308	AA	AB
12_30482	AA	AB
12_30575	AA	AB
12_30972	AA	AB
12_30995	BB	AB
SCRI_RS_102837	BB	AB
SCRI_RS_106799	AA	AB
SCRI_RS_111820	AA	AB
SCRI_RS_114549	AA	AB
SCRI_RS_119312	AA	AB
SCRI_RS_12396	BB	AB
SCRI_RS_12516	BB	AB
SCRI_RS_12723	AA	AB
SCRI_RS_127968	AA	AB
SCRI_RS_131897	AA	AB
SCRI_RS_132017	BB	AB
SCRI_RS_133224	AA	AB
SCRI_RS_133377	BB	AB
SCRI_RS_134017	BB	AB
SCRI_RS_134956	AA	AB
SCRI_RS_13639	AA	AB
SCRI_RS_13882	AA	AB
SCRI_RS_139987	AA	AB
SCRI_RS_141591	AA	AB
SCRI_RS_143810	AA	AB
SCRI_RS_144337	AA	AB
SCRI_RS_146959	AA	AB
SCRI_RS_147342	BB	AB
SCRI_RS_149877	AA	AB
SCRI_RS_151617	AA	AB
SCRI_RS_151716	AA	AB
SCRI_RS_151764	AA	AB
SCRI_RS_152347	AA	AB
SCRI_RS_152388	AA	AB
SCRI_RS_152931	AA	AB
SCRI_RS_155997	AA	AB
SCRI_RS_159021	AA	AB
SCRI_RS_159441	BB	AB
SCRI_RS_160512	BB	AB
SCRI_RS_161285	AA	AB
SCRI_RS_164308	BB	AB
SCRI_RS_166540	BB	AB
SCRI_RS_167383	AA	AB
SCRI_RS_170235	AA	AB
SCRI_RS_173145	BB	AB
SCRI_RS_173554	AA	AB
SCRI_RS_174699	BB	AB
SCRI_RS_175771	BB	AB
SCRI_RS_175805	AA	AB
SCRI_RS_176159	AA	AB
SCRI_RS_180871	AA	AB
SCRI_RS_181370	BB	AB
SCRI_RS_184784	BB	AB
SCRI_RS_184857	AA	AB
SCRI_RS_186901	AA	AB
SCRI_RS_187590	AA	AB
SCRI_RS_188340	AA	AB
SCRI_RS_189465	AA	AB
SCRI_RS_190002	AA	AB
SCRI_RS_190401	BB	AB
SCRI_RS_192386	AA	AB
SCRI_RS_194036	AA	AB
SCRI_RS_194453	BB	AB
SCRI_RS_194653	BB	AB
SCRI_RS_195226	AA	AB
SCRI_RS_196604	BB	AB
SCRI_RS_198148	BB	AB
SCRI_RS_199922	BB	AB
SCRI_RS_200057	AA	AB
SCRI_RS_200512	AA	AB
SCRI_RS_205663	AA	BB
SCRI_RS_206867	BB	AB
SCRI_RS_211943	AA	AB
SCRI_RS_214028	AA	AB
SCRI_RS_217123	BB	AB
SCRI_RS_217794	BB	AB
SCRI_RS_218200	AA	AB
SCRI_RS_221886	AA	AB
SCRI_RS_221992	BB	AB
SCRI_RS_222844	AA	AB
SCRI_RS_224671	AA	AB
SCRI_RS_226221	BB	AB
SCRI_RS_231261	AA	AB
SCRI_RS_233261	AA	AB
SCRI_RS_234502	AA	AB
SCRI_RS_239569	AA	AB
SCRI_RS_3114	BB	AB
SCRI_RS_3287	AA	AB
SCRI_RS_7940	AA	AB
SCRI_RS_89111	BB	AB
SCRI_RS_9584	AA	AB
SCRI_RS_99965	BB	AB

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.