T3 Barley Sandbox

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What's New

Phenotype data
Six additional phenotype trials from the North American Barley Scab Evaluation Nursery (NABSEN) have now been uploaded from Fargo, ND, and Langdon, ND (2014-2016).
Data Selection
Physical Map added for IBSC 2016 assembly.
Data Analysis Tools
BLAST database and JBrowse for IBSC 2016 assembly.
GWAS results updated to include EMBL-EBI expression data.
GWAS results updated to include Plant Reactome Pathways

Also see conflicts by experiment, conflicts by marker, and All Allele Conflicts.

Allele Conflicts for NUDIFURCATUS between experiments

Each entry has number of conflicts / comparisons (percent conflicts).

	2011_9K_NB_allplates	2018_CCRU_50K
2011_9K_NB_allplates	0/6913 (0%)
2018_CCRU_50K	96/6016 (2%)	0/43405 (0%)

Allele Conflicts for NUDIFURCATUS sorted by marker name

marker name	2011_9K_NB_allplates	2018_CCRU_50K
11_10064	AA	AB
11_10075	BB	AB
11_10112	AA	AB
11_10150	BB	AB
11_10329	BB	AB
11_10338	AA	AB
11_10584	AA	AB
11_20008	AA	AB
11_20497	BB	AB
11_20805	AA	AB
11_20971	AA	AB
11_21065	BB	AB
11_21140	AA	AB
11_21348	AA	AB
11_21405	AA	AB
11_21447	AA	AB
12_11318	AA	AB
12_20187	AA	AB
12_20867	AA	AB
12_30230	AA	AB
12_30308	AA	AB
12_30450	AA	AB
12_30817	BB	AB
12_30927	BB	AB
12_30997	AA	AB
SCRI_RS_102837	BB	AB
SCRI_RS_106799	AA	AB
SCRI_RS_111820	AA	AB
SCRI_RS_112718	BB	AB
SCRI_RS_116575	AA	AB
SCRI_RS_119312	AA	AB
SCRI_RS_12516	BB	AB
SCRI_RS_12723	AA	AB
SCRI_RS_133377	BB	AB
SCRI_RS_13882	AA	AB
SCRI_RS_13952	AA	AB
SCRI_RS_139987	AA	AB
SCRI_RS_141591	AA	AB
SCRI_RS_144337	AA	AB
SCRI_RS_146959	AA	AB
SCRI_RS_147342	BB	AB
SCRI_RS_149877	AA	AB
SCRI_RS_151764	AA	AB
SCRI_RS_152347	AA	AB
SCRI_RS_155997	AA	AB
SCRI_RS_157097	BB	AB
SCRI_RS_157444	AA	AB
SCRI_RS_158091	AA	AB
SCRI_RS_158679	BB	AB
SCRI_RS_159441	BB	AB
SCRI_RS_161702	AA	AB
SCRI_RS_162760	AB	AA
SCRI_RS_164308	BB	AB
SCRI_RS_165473	AA	AB
SCRI_RS_166511	AA	AB
SCRI_RS_166540	BB	AB
SCRI_RS_170159	AA	AB
SCRI_RS_170388	AA	AB
SCRI_RS_175805	AA	AB
SCRI_RS_176159	AA	AB
SCRI_RS_181370	BB	AB
SCRI_RS_182947	AA	AB
SCRI_RS_184894	AA	AB
SCRI_RS_187590	AA	AB
SCRI_RS_188340	AA	AB
SCRI_RS_188511	AA	AB
SCRI_RS_189409	BB	AB
SCRI_RS_194036	AA	AB
SCRI_RS_194653	BB	AB
SCRI_RS_195051	AA	AB
SCRI_RS_195226	AA	AB
SCRI_RS_197256	AA	AB
SCRI_RS_198148	BB	AB
SCRI_RS_198601	AA	AB
SCRI_RS_198883	AA	AB
SCRI_RS_200512	AA	AB
SCRI_RS_206867	BB	AB
SCRI_RS_208760	BB	AB
SCRI_RS_211943	AA	AB
SCRI_RS_214028	AA	AB
SCRI_RS_216141	BB	AB
SCRI_RS_217123	BB	AB
SCRI_RS_218235	BB	AB
SCRI_RS_219799	AA	AB
SCRI_RS_221945	AA	AB
SCRI_RS_221992	BB	AB
SCRI_RS_222920	AA	AB
SCRI_RS_224671	AA	AB
SCRI_RS_226221	BB	AB
SCRI_RS_229673	BB	AB
SCRI_RS_235055	AA	AB
SCRI_RS_239569	AA	AB
SCRI_RS_3114	BB	AB
SCRI_RS_72983	AA	AB
SCRI_RS_89111	BB	AB
SCRI_RS_99965	BB	AB

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.