T3 Barley Sandbox

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What's New

Phenotype data
Six additional phenotype trials from the North American Barley Scab Evaluation Nursery (NABSEN) have now been uploaded from Fargo, ND, and Langdon, ND (2014-2016).
Data Selection
Physical Map added for IBSC 2016 assembly.
Data Analysis Tools
BLAST database and JBrowse for IBSC 2016 assembly.
GWAS results updated to include EMBL-EBI expression data.
GWAS results updated to include Plant Reactome Pathways

Also see conflicts by experiment, conflicts by marker, and All Allele Conflicts.

Allele Conflicts for NSGC6416 between experiments

Each entry has number of conflicts / comparisons (percent conflicts).

	2011_9K_NB_allplates	2018_CCRU_50K
2011_9K_NB_allplates	0/6913 (0%)
2018_CCRU_50K	93/6032 (2%)	0/43613 (0%)

Allele Conflicts for NSGC6416 sorted by marker name

marker name	2011_9K_NB_allplates	2018_CCRU_50K
11_10028	AA	AB
11_10092	BB	AB
11_10128	AA	AB
11_10150	BB	AB
11_10338	AA	AB
11_10995	AA	AB
11_11031	AA	AB
11_20099	AA	AB
11_20188	BB	AB
11_20225	AA	AB
11_20497	BB	AB
11_20805	AA	AB
11_21140	AA	AB
11_21168	AA	AB
11_21348	AA	AB
11_21405	AA	AB
12_11318	AA	AB
12_30817	BB	AB
12_30927	BB	AB
12_30972	AA	AB
12_30995	BB	AB
12_31006	AB	AA
BK_07	AA	AB
BK_17	BB	AB
SCRI_RS_111820	AA	AB
SCRI_RS_119312	AA	AB
SCRI_RS_12723	AA	AB
SCRI_RS_133377	BB	AB
SCRI_RS_133538	BB	AB
SCRI_RS_134956	AA	AB
SCRI_RS_136586	AA	AB
SCRI_RS_136857	AA	AB
SCRI_RS_139987	AA	AB
SCRI_RS_147342	BB	AB
SCRI_RS_149877	AA	AB
SCRI_RS_151617	AA	AB
SCRI_RS_151764	AA	AB
SCRI_RS_152388	AA	AB
SCRI_RS_152504	AA	AB
SCRI_RS_156276	AA	AB
SCRI_RS_159441	BB	AB
SCRI_RS_160512	BB	AB
SCRI_RS_161221	AA	AB
SCRI_RS_161349	AA	AB
SCRI_RS_162760	AB	AA
SCRI_RS_164726	AA	AB
SCRI_RS_166323	AA	AB
SCRI_RS_166511	AA	AB
SCRI_RS_166540	BB	AB
SCRI_RS_167383	AA	AB
SCRI_RS_167755	AA	AB
SCRI_RS_16799	BB	AB
SCRI_RS_169593	AA	AB
SCRI_RS_170235	AA	AB
SCRI_RS_170388	AA	AB
SCRI_RS_172665	AA	AB
SCRI_RS_174699	BB	AB
SCRI_RS_175805	AA	AB
SCRI_RS_180871	AA	AB
SCRI_RS_181370	BB	AB
SCRI_RS_182947	AA	AB
SCRI_RS_187590	AA	AB
SCRI_RS_188340	AA	AB
SCRI_RS_189409	BB	AB
SCRI_RS_189465	AA	AB
SCRI_RS_190401	BB	AB
SCRI_RS_194453	BB	AB
SCRI_RS_195226	AA	AB
SCRI_RS_196604	BB	AB
SCRI_RS_197256	AA	AB
SCRI_RS_198148	BB	AB
SCRI_RS_200512	AA	AB
SCRI_RS_205803	AA	AB
SCRI_RS_206867	BB	AB
SCRI_RS_216141	BB	AB
SCRI_RS_217123	BB	AB
SCRI_RS_217794	BB	AB
SCRI_RS_218200	AA	AB
SCRI_RS_218235	BB	AB
SCRI_RS_219233	AB	AA
SCRI_RS_221945	AA	AB
SCRI_RS_221992	BB	AB
SCRI_RS_222345	AB	BB
SCRI_RS_222844	AA	AB
SCRI_RS_226221	BB	AB
SCRI_RS_229673	BB	AB
SCRI_RS_231261	AA	AB
SCRI_RS_235055	AA	AB
SCRI_RS_3287	AA	AB
SCRI_RS_6913	BB	AB
SCRI_RS_7940	AA	AB
SCRI_RS_89111	BB	AB
SCRI_RS_99965	BB	AB

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.