T3 Barley Sandbox

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What's New

Phenotype data
Six additional phenotype trials from the North American Barley Scab Evaluation Nursery (NABSEN) have now been uploaded from Fargo, ND, and Langdon, ND (2014-2016).
Data Selection
Physical Map added for IBSC 2016 assembly.
Data Analysis Tools
BLAST database and JBrowse for IBSC 2016 assembly.
GWAS results updated to include EMBL-EBI expression data.
GWAS results updated to include Plant Reactome Pathways

Also see conflicts by experiment, conflicts by marker, and All Allele Conflicts.

Allele Conflicts for IAR/B/155-2 between experiments

Each entry has number of conflicts / comparisons (percent conflicts).

	2011_9K_NB_allplates	Ethiopia_Eritrea_9K
2011_9K_NB_allplates	0/6913 (0%)
Ethiopia_Eritrea_9K	25/6411 (0%)	0/6702 (0%)

Allele Conflicts for IAR/B/155-2 sorted by marker name

marker name	2011_9K_NB_allplates	Ethiopia_Eritrea_9K
11_10442	AA	AB
11_11239	BB	AB
11_11481	AA	AB
11_21057	AA	AB
11_21272	AA	AB
12_30368	AA	AB
12_30441	AA	AB
12_30445	AA	AB
12_30785	BB	AB
BK_01	AA	AB
SCRI_RS_106799	AA	AB
SCRI_RS_12396	BB	AB
SCRI_RS_12723	AA	BB
SCRI_RS_132599	AA	BB
SCRI_RS_134252	BB	AB
SCRI_RS_136586	AA	AB
SCRI_RS_137450	AA	BB
SCRI_RS_149479	AA	AB
SCRI_RS_170159	AA	AB
SCRI_RS_171198	AA	AB
SCRI_RS_193506	AA	BB
SCRI_RS_206867	BB	AB
SCRI_RS_219733	AA	AB
SCRI_RS_221886	AA	AB
SCRI_RS_235694	AA	AB

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.