T3 Barley Sandbox

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What's New

Phenotype data
Six additional phenotype trials from the North American Barley Scab Evaluation Nursery (NABSEN) have now been uploaded from Fargo, ND, and Langdon, ND (2014-2016).
Data Selection
Physical Map added for IBSC 2016 assembly.
Data Analysis Tools
BLAST database and JBrowse for IBSC 2016 assembly.
GWAS results updated to include EMBL-EBI expression data.
GWAS results updated to include Plant Reactome Pathways

Also see conflicts by experiment, conflicts by marker, and All Allele Conflicts.

Allele Conflicts for FEG252-37 between experiments

Each entry has number of conflicts / comparisons (percent conflicts).

	9K_MN_CAP6_2013	9K_MN_GEN10_2013
9K_MN_CAP6_2013	0/7864 (0%)
9K_MN_GEN10_2013	127/7864 (2%)	0/7864 (0%)

Allele Conflicts for FEG252-37 sorted by marker name

marker name	9K_MN_CAP6_2013	9K_MN_GEN10_2013
11_10064	AA	AB
11_10150	BB	AB
11_10209	AA	AB
11_10338	AA	AB
11_10377	AA	AB
11_10584	AA	AB
11_10999	BB	AB
11_11031	AA	AB
11_20008	AA	AB
11_20225	AA	AB
11_20303	BB	AB
11_20354	BB	AB
11_20745	AA	AB
11_20971	BB	AB
11_20982	AA	AB
11_21177	AA	AB
11_21220	AA	AB
11_21277	AA	AB
11_21348	AA	AB
12_10581	AA	AB
12_20368	AA	AB
12_21137	AA	AB
12_30224	AA	AB
12_30230	AA	AB
12_30371	BB	AB
12_30441	AA	AB
12_30445	AA	AB
12_30450	BB	AB
12_30482	AA	AB
12_30575	AA	AB
12_30780	AA	AB
12_30900	BB	AB
12_31144	AA	AB
12_31161	BB	AB
12_31298	BB	AB
BK_07	AA	AB
SCRI_RS_106140	AA	AB
SCRI_RS_106142	BB	AB
SCRI_RS_11114	AA	AB
SCRI_RS_111312	AA	AB
SCRI_RS_112718	BB	AB
SCRI_RS_114487	BB	AA
SCRI_RS_116575	BB	AB
SCRI_RS_125793	AA	AB
SCRI_RS_126143	AA	AB
SCRI_RS_12723	AA	AB
SCRI_RS_129048	AA	AB
SCRI_RS_129198	AB	AA
SCRI_RS_131897	BB	AB
SCRI_RS_131936	BB	AB
SCRI_RS_132345	AA	AB
SCRI_RS_132599	AA	AB
SCRI_RS_135087	AA	BB
SCRI_RS_136590	BB	AB
SCRI_RS_136857	BB	AB
SCRI_RS_138691	AA	AB
SCRI_RS_13952	AA	AB
SCRI_RS_139987	AA	AB
SCRI_RS_140356	AA	AB
SCRI_RS_142393	AA	AB
SCRI_RS_142420	AA	AB
SCRI_RS_143810	AA	AB
SCRI_RS_144337	AA	AB
SCRI_RS_146959	AA	AB
SCRI_RS_148694	AB	AA
SCRI_RS_149479	AA	AB
SCRI_RS_151716	BB	AB
SCRI_RS_152347	AA	AB
SCRI_RS_153154	AA	AB
SCRI_RS_155997	AA	AB
SCRI_RS_159158	AA	AB
SCRI_RS_159441	BB	AB
SCRI_RS_166430	AA	BB
SCRI_RS_171038	AA	AB
SCRI_RS_172665	AA	AB
SCRI_RS_173459	AA	AB
SCRI_RS_179388	AA	AB
SCRI_RS_179400	AA	AB
SCRI_RS_179809	BB	AA
SCRI_RS_180	BB	AB
SCRI_RS_180004	BB	AB
SCRI_RS_180871	AA	AB
SCRI_RS_182	AA	AB
SCRI_RS_182195	AA	AB
SCRI_RS_184894	AA	AB
SCRI_RS_185604	AA	AB
SCRI_RS_187887	AA	AB
SCRI_RS_189465	BB	AB
SCRI_RS_189923	AA	AB
SCRI_RS_190002	AA	AB
SCRI_RS_193756	AA	AB
SCRI_RS_194453	AA	AB
SCRI_RS_195810	AA	AB
SCRI_RS_196373	AA	AB
SCRI_RS_1971	AA	AB
SCRI_RS_198546	AA	AB
SCRI_RS_198601	AA	AB
SCRI_RS_200057	AA	AB
SCRI_RS_200389	AA	AB
SCRI_RS_20187	AA	AB
SCRI_RS_203997	AA	AB
SCRI_RS_204616	BB	AB
SCRI_RS_205508	AA	AB
SCRI_RS_206793	AA	AB
SCRI_RS_207399	AA	AB
SCRI_RS_208760	AA	AB
SCRI_RS_209249	AA	AB
SCRI_RS_216141	BB	AB
SCRI_RS_217794	BB	AB
SCRI_RS_219152	BB	AA
SCRI_RS_219799	AA	AB
SCRI_RS_221939	BB	AB
SCRI_RS_224512	AA	AB
SCRI_RS_225193	AA	AB
SCRI_RS_225263	AA	AB
SCRI_RS_226193	AA	AB
SCRI_RS_231244	AA	AB
SCRI_RS_231704	BB	AB
SCRI_RS_231739	AA	AB
SCRI_RS_234502	AA	AB
SCRI_RS_235055	AA	AB
SCRI_RS_237689	AA	AB
SCRI_RS_3159	BB	AB
SCRI_RS_34979	AA	AB
SCRI_RS_6226	BB	AB
SCRI_RS_6917	AA	BB
SCRI_RS_89111	BB	AB

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.