T3 Barley Sandbox

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What's New

Phenotype data
Six additional phenotype trials from the North American Barley Scab Evaluation Nursery (NABSEN) have now been uploaded from Fargo, ND, and Langdon, ND (2014-2016).
Data Selection
Physical Map added for IBSC 2016 assembly.
Data Analysis Tools
BLAST database and JBrowse for IBSC 2016 assembly.
GWAS results updated to include EMBL-EBI expression data.
GWAS results updated to include Plant Reactome Pathways

Also see conflicts by experiment, conflicts by marker, and All Allele Conflicts.

Allele Conflicts for MS12_2145-016 between experiments

Each entry has number of conflicts / comparisons (percent conflicts).

	VC_MNSC3_2012_384	9K_MN_CAP6_2013
VC_MNSC3_2012_384	0/383 (0%)
9K_MN_CAP6_2013	6/352 (1.7%)	0/7864 (0%)

Allele Conflicts for MS12_2145-016 sorted by marker name

marker name	VC_MNSC3_2012_384	9K_MN_CAP6_2013
11_10239	BB	AB
11_10307	AB	BB
11_11040	BB	AA
12_30117	AA	BB
12_30759	AB	BB
12_30900	AA	AB

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.