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Marker Annotation Report

This analysis shows the results of using BLAST to match the markers sequence in the T3 database to the the wheat genome sequence.
The BLAST results link to GBrowse URGI and Ensembl genome browsers. The top level page gives a summary of the matching markers for each experiment.
Select the match link to view the BLAST hits for each experiment.

Methods: A marker is identified as a match if either
1. the sequence homology is > 99% and aligment length is > 95% of the query sequence.
2. there is only one mismatch and the alignment length is > 95% of the query sequence.
The analysis uses blastn v2.2.28+ with the following arguments "-outfmt 6 -dust no -word_size 16 -task megablast -evalue 1e-08".

BLAST matches for experiment WBIP384_ABNAM_2012
Select link to view match in Ensembl Plant.

QueryReference Contigposition
11_100236H16132371
11_100257H19591102
11_100263H28807967
11_100473H552742686
11_100652H723372150
11_100787H636617013
11_100805H615400118
11_100813H35229528
11_101076H570019236
11_101123H11039299
11_101206H1361796
11_101234H630859299
11_101307H310311500
11_101366H16749731
11_101675H513141229
11_101782H48475931
11_101861H17570165
11_102206H527476378
11_102342H90243000
11_102567H217287328
11_103017H590487359
11_103037H532185376
11_103105H661443694
11_103262H3326203
11_103365H637433297
11_103503H542983380
11_103635H620203427
11_103982H685490222
11_104094H3772116
11_104114H424870308
11_104276H28346329
11_104616H56162524
11_104711H496933333
11_104946H35207872
11_105252H49988534
11_105593H23094350
11_105653H17613152
11_105767H46106073
11_105861H538423095
11_105971H37114410
11_106005H649232960
11_106192H647661677
11_106313H660938022
11_106382H100641976
11_106394H544748028
11_106441H541351026
11_106512H606128866
11_106562H720349512
11_106885H16277132
11_106943H684467546
11_10695Un56732627
11_106974H633602081
11_107072H707268000
11_107217H75226809
11_107365H656077276
11_107473H590807078
11_107486H574761427
11_107571H18359684
11_107641H34087686
11_107835H598250952
11_107862H645594827
11_107934H45245669
11_107977H635305241
11_108141H23923839
11_108176H47366298
11_108195H609200677
11_108213H633085996
11_108331H351868939
11_108417H14802282
11_108541H533708596
11_108857H638912980
11_108912H36438267
11_109031H545323191
11_109432H21582733
11_109837H167862263
11_109997H650404231
11_110371H490454901
11_110432H701937365
11_110612H70642845
11_110676H404560107
11_110722H570919247
11_110942H693684636
11_110987H98043395
11_111144H459813388
11_111476H536786820
11_111855H629948107
11_111994H13300813
11_112074H529292786
11_112134H600035002
11_112165H644058548
11_112362H705262924
11_112994H632171834
11_113454H4314841
11_113591H377780604
11_113645H662755816
11_113755H591828836
11_113815H4734215
11_113913H514755234
11_114407H642430202
11_114457H505361481
11_114796H12015182
11_115004H590917631
11_115052H74603738
11_115075H585152195
11_115325H605593058
11_200093H613898250
11_200105H6354602
11_200156H493226860
11_200173H532386292
11_200211H526705451
11_200233H617763235
11_200427H524825469
11_200586H443897804
11_200642H698901005
11_200965H512127664
11_201072H19588001
11_201211H482407642
11_201267H39065208
11_201275H583318805
11_201345H556603279
11_201397H640932887
11_201553H672938827
11_201933H39504094
11_201957H111292841
11_201974H595772102
11_202104H15304563
11_202244H636430559
11_202326H1579056
11_202427H8001693
11_202724H639755186
11_202946H7539661
11_203275H552971221
11_203556H562812969
11_203563H55590274
11_203584H601707793
11_203614H511458393
11_203711H13581567
11_203796H554872905
11_203865H13846829
11_203872H118999843
11_203925H485027002
11_204025H668642360
11_204124H502029408
11_204172H254972206
11_204224H18759288
11_204495H547243067
11_204656H532526157
11_204857H539800515
11_204957H22774581
11_204982H687725717
11_205002H183381488
11_205154H622617880
11_205273H647753562
11_205501H498975662
11_205574H10531487
11_205663H545314204
11_20582Un313982
11_205852H494259017
11_206104H472369069
11_206171H22567867
11_206263H605214250
11_206295H581323626
11_206445H503177199
11_206535H589787307
11_206566H151845854
11_206736H502536025
11_206765H612799248
11_206894H599170288
11_207014H632600239
11_207135H479122439
11_207152H731304950
11_207227H19656144
11_207234H537437597
11_207324H608851343
11_207365H514827552
11_207404H578447444
11_207423H17409777
11_207587H31373284
11_207721H557125644
11_207774H19930065
11_207801H522487000
11_207973H2268898
11_208642H38834908
11_208857H176154907
11_209035H34677472
11_209523H666221523
11_209585H156370085
11_209602H627657786
11_209627H647000283
11_209683H24951816
11_209696H517938283
11_209726H547258865
11_209763H8913941
11_210072H674314269
11_210083H680228127
11_210256H541489037
11_210326H9846099
11_210381H537362806
11_210531H403309609
11_210992H755094798
11_211047H632318636
11_211203H507024435
11_211261H479986322
11_211335H504438116
11_211401H539810979
11_211752H677845247
11_211775H595416742
11_212097H629621950
11_212202H711230478
11_21225Un89985694
11_212297H628369772
11_212535H31032251
11_212566H509626192
11_212593H48467899
11_212652H34864969
11_212723H667178220
11_212773H620572155
11_212975H618532841
11_213077H4122880
11_213095H498937976
11_213555H623908293
11_213702H718628790
11_213772H11188932
11_213915H24948895
11_213983H7767159
11_214273H654775497
11_214311H453000239
11_214362H749741789
11_214402H716727690
11_214487H576344943
11_214556H571737578
11_21480Un75877481
11_214904H51665189
11_214917H53441694
11_215085H315391792
11_215173H609385739
11_215216H343390
11_215333H45400484
12_100795H378886729
12_101343H587004550
12_101661H468278886
12_101733H3865263
12_101812H744274485
12_102187H40109823
12_102351H80265534
12_102677H87946043
12_102962H51222231
12_103714H33956892
12_104201H71544
12_104472H742025697
12_105022H13236386
12_105085H372542948
12_105437H626516365
12_105546H14330320
12_105792H727570263
12_106057H80785256
12_106502H622887903
12_106623H611543683
12_106967H62559292
12_107152H62239304
12_107172H620201601
12_107772H26199616
12_108244H617971329
12_108445H558773419
12_108604H27327299
12_109305H535443089
12_109597H66195606
12_109683H34959733
12_109692H663583331
12_109797H48001348
12_110111H5770204
12_111543H654554805
12_112722H119984321
12_114091H530746330
12_114756H463863740
12_114961H551836652
12_201871H520008962
12_203693H640567110
12_300093H485716108
12_300106H14071509
12_300267H560756345
12_300553H693425600
12_300903H599466360
12_300923H648171173
12_301144H618419852
12_301364H583582367
12_301584H620533072
12_303284H36217747
12_303412H732698101
12_303616H30508253
12_303687H620484857
12_303782H762152399
12_303854H629486243
12_304361H109055279
12_304565H565946520
12_304673H103832919
12_304743H63807754
12_305166H37274484
12_305216H29458421
12_305307H23576066
12_305335H541555119
12_305404H7870312
12_305461H508566982
12_305552H691870667
12_305696H115112608
12_305713H28161638
12_305775H659532782
12_305844H613644778
12_305881H10747464
12_306342H197531589
12_306355H603612830
12_306516H7701030
12_306565H653569721
12_306803H430590525
12_306986H539553889
12_307032H71400580
12_307055H561727550
12_307145H6937826
12_307151H1562127
12_307421H458646216
12_307527H59140448
12_307531H427973108
12_307554H555556788
12_307644H1302636
12_307807H27546933
12_308254H642563582
12_308267H654411756
12_308293H493556092
12_308426H14332108
12_308545H559462764
12_308654H23601422
12_308722H29124597
12_309002H652031655
12_309213H673188759
12_309273H625166564
12_309305H599128110
12_309566H583345643
12_309597H1395094
12_309765H2570921
12_310235H2754382
12_310446H553204175
12_310952H707538666
12_311235H666455425
12_311384H631306280
12_311394H624584147
12_311484H586675142
12_311491H8468465
12_311667H642081131
12_312336H1170011
12_312356H542063070
12_312562H545218326
12_312617H598982414
12_312623H567974349
12_312813H428567922
12_312983H37282230
12_312993H578433058
12_313002H754640416
12_313134H24251091
12_313536H550500760
12_313723H298534459
12_313957H578368851
12_314187H367767660
12_314224H643754671
12_314275H528355024
12_314283H1367441
12_314407H593707032
12_314452H639288725
12_314462H2096964
12_314507H14185696
12_314527H141857069
12_314584H6500728
12_314641H459030191
12_314856H24329908
12_314956H565800002
12_315364H568135239

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.