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Marker Annotation Report

This analysis shows the results of using BLAST to match the markers sequence in the T3 database to the the wheat genome sequence.
The BLAST results link to GBrowse URGI and Ensembl genome browsers. The top level page gives a summary of the matching markers for each experiment.
Select the match link to view the BLAST hits for each experiment.

Methods: A marker is identified as a match if either
1. the sequence homology is > 99% and aligment length is > 95% of the query sequence.
2. there is only one mismatch and the alignment length is > 95% of the query sequence.
The analysis uses blastn v2.2.28+ with the following arguments "-outfmt 6 -dust no -word_size 16 -task megablast -evalue 1e-08".

BLAST matches for experiment VC_MNWC4_2013_384
Select link to view match in Ensembl Plant.

QueryReference Contigposition
11_100021H458109745
11_100061H480448307
11_100136H46541683
11_100236H16132371
11_100257H19591102
11_100263H28807967
11_100507H78305253
11_100524H545849890
11_100585H280612563
11_100646H15802022
11_100697H492206525
11_100722H751886787
11_100787H636617013
11_100852H758851055
11_100945H579653238
11_100955H601142082
11_101076H570019236
11_101123H11039299
11_101206H1361796
11_101282H697193072
11_101296H30807567
11_101307H310311500
11_101396H550448907
11_101656H14306449
11_101697H597748994
11_101827H628806795
11_101843H606945320
11_101861H17570165
11_102026H541830530
11_102132H654161251
11_102142H672009556
11_102162H32348573
11_102214H12270849
11_102396H564086003
11_102474H585200008
11_102533H591895583
11_102605H38558392
11_102751H36687000
11_10292Un77950893
11_102997H126298543
11_103017H590487359
11_103037H532185376
11_103094H581788124
11_103105H661443694
11_103152H740894659
11_103194H5074747
11_103241H397171463
11_103262H3326203
11_103316H529091969
11_103433H694855059
11_103467H70162054
11_103571H517540377
11_103794H435363347
11_103874H644449830
11_104055H657266491
11_104292H704365928
11_104317H110757927
11_104362H542670441
11_104381H303519071
11_104547H639840882
11_104601H2579017
11_104701H92433217
11_104775H565888314
11_104804H437167992
11_104946H35207872
11_105104H623209165
11_105161H456593344
11_105215H597317333
11_105252H49988534
11_105347H448912368
11_105521H419381787
11_105593H23094350
11_105653H17613152
11_105744H11770361
11_105767H46106073
11_105785H536448463
11_105884H604442927
11_105971H37114410
11_106013H54950033
11_106215H23246071
11_106283H579748358
11_106382H100641976
11_106415H482426682
11_106441H541351026
11_106482H52786444
11_106766H21816820
11_106827H2212170
11_106861H476365128
11_10695Un56732627
11_106974H633602081
11_107007H428682740
11_107023H681332144
11_107072H707268000
11_107124H630904023
11_107217H75226809
11_107291H530180226
11_107312H701963123
11_107384H10019019
11_107441H18807356
11_10753Un40990529
11_107601H23815813
11_107641H34087686
11_107702H755005509
11_107727H59719498
11_10775Un554832
11_107835H598250952
11_107854H612082524
11_107996H25149597
11_108182H636549210
11_108195H609200677
11_108253H36786737
11_108372H51957324
11_108423H641758598
11_108673H633641840
11_108686H16876562
11_108695H646684592
11_108731H14374682
11_109144H511791369
11_109192H52014030
11_109207H29716819
11_109432H21582733
11_109837H167862263
11_109997H650404231
11_110023H47570630
11_110147H67727614
11_110152H115322334
11_110245H293388505
11_110485H12380644
11_110542H91940117
11_110592H9658541
11_110612H70642845
11_110664H633042658
11_110805H598917589
11_110863H219956193
11_110942H693684636
11_110987H98043395
11_111116H578867997
11_111273H652305192
11_111476H536786820
11_111804H37600756
11_112165H644058548
11_112362H705262924
11_112437H623438216
11_112622H737639570
11_112946H545956735
11_112994H632171834
11_113072H678192598
11_113437H573239658
11_113454H4314841
11_113505H553412544
11_113555H527152265
11_113645H662755816
11_113755H591828836
11_113815H4734215
11_113842H491105224
11_114066H6770161
11_114363H673608563
11_114407H642430202
11_114415H617104182
11_114457H505361481
11_114565H587890484
11_114586H527406890
11_114796H12015182
11_114975H626697338
11_115023H186950158
11_115052H74603738
11_115163H688380435
11_115281H536947615
11_200093H613898250
11_200105H6354602
11_200124H32413102
11_200147H16621046
11_200233H617763235
11_200526H32052872
11_200586H443897804
11_200607H109656682
11_200624H535955130
11_200837H537251062
11_200853H653287342
11_200927H607662553
11_200951H429810625
11_200975H542621417
11_201037H593169091
11_201072H19588001
11_201144H35787768
11_201153H559686530
11_201194H620872317
11_201251H516309831
11_201267H39065208
11_201275H583318805
11_201345H556603279
11_201397H640932887
11_201454H1668279
11_201491H509763190
11_201553H672938827
11_201593H3981157
11_201602H246219296
11_201623H108142581
11_201804H35548341
11_201895H657005491
11_201933H39504094
11_201974H595772102
11_202244H636430559
11_202265H2540710
11_202395H373454403
11_202457H12860086
11_202497H56813710
11_202523H3868857
11_20266Un95056833
11_202901H470389531
11_203024H16669632
11_203275H552971221
11_20365Un115139269
11_203675H501849882
11_203711H13581567
11_203796H554872905
11_203844H607800862
11_203865H13846829
11_203872H118999843
11_203885H619075706
11_204124H502029408
11_204156H12662384
11_204382H535553641
11_204663H441096005
11_204957H22774581
11_204982H687725717
11_205021H1913952
11_205047H649471783
11_205154H622617880
11_205273H647753562
11_205316H552807238
11_205335H5617158
11_205455H630052019
11_205501H498975662
11_205523H22601987
11_205574H10531487
11_205632H12243677
11_205663H545314204
11_205707H610498605
11_205902H733665592
11_206006H182973407
11_206031H553490762
11_206073H28024941
11_206251H523884637
11_206263H605214250
11_206295H581323626
11_206366H499364199
11_206473H44976265
11_206503H634853591
11_206546H536785563
11_206571H484964797
11_206684H646020727
11_206756H94715959
11_206826H517882968
11_206865H644819915
11_206992H638242025
11_207014H632600239
11_207107H5664553
11_207135H479122439
11_207146H495778737
11_207206H132308036
11_207227H19656144
11_207365H514827552
11_207404H578447444
11_207423H17409777
11_207446H509428370
11_207587H31373284
11_207654H601568256
11_207721H557125644
11_207812H649449314
11_207921H504087501
11_207955H557081865
11_207973H2268898
11_208441H525478648
11_208505H229928354
11_208583H1006316
11_208642H38834908
11_20868Un93085224
11_208735H9866403
11_208773H535783451
11_209091H520489712
11_209232H684263618
11_209394H50778111
11_209443H629156883
11_209561H455813887
11_209591H533223547
11_209602H627657786
11_209627H647000283
11_209703H259755368
11_209726H547258865
11_209744H627962516
11_209763H8913941
11_209953H487528331
11_210001H362148549
11_210083H680228127
11_210115H146141244
11_210152H31559962
11_210326H9846099
11_210525H661973771
11_210564H2800462
11_210681H540586570
11_210734H66861565
11_210933H76088289
11_211093H160752469
11_211102H581251463
11_211126H578734148
11_211224H25916241
11_211246H288957353
11_211252H722486571
11_211261H479986322
11_211335H504438116
11_211401H539810979
11_211415H650559496
11_211625H662638435
11_211633H560934688
11_211752H677845247
11_211893H64618663
11_21191Un52769203
11_211921H496080353
11_212025H4183705
11_212052H619885222
11_212097H629621950
11_212104H634781955
11_212237H641762860
11_212246H524652121
11_212261H7228966
11_212297H628369772
11_212434H618502745
11_212535H31032251
11_212544H76591117
11_212582H610741736
11_212605H371780738
11_212663H666091295
11_212723H667178220
11_212816H38242974
11_213042H42238196
11_213095H498937976
11_213152H712801076
11_213512H663236849
11_213594H10552595
11_213772H11188932
11_213813H608636473
11_213894H23477467
11_213921H528122253
11_214023H112601789
11_214062H718210885
11_214265H9862051
11_214273H654775497
11_214311H453000239
11_214402H716727690
11_214455H520992168
11_214487H576344943
11_214556H571737578
11_21480Un75877481
11_214917H53441694
11_214953H611781347
11_215053H580635994
11_215085H315391792
11_215096H415952337
11_215133H615642170
11_215216H343390
11_215287H49445658
12_308505H559673560
12_308545H559462764
12_308722H29124597
12_308953H619904822
12_312365H562133547

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.