Marker Annotation Report
This analysis shows the results of using BLAST to match the markers sequence in the T3 database to the the wheat genome sequence.The BLAST results link to GBrowse URGI and Ensembl genome browsers. The top level page gives a summary of the matching markers for each experiment.
Select the match link to view the BLAST hits for each experiment.
Methods: A marker is identified as a match if either
1. the sequence homology is > 99% and aligment length is > 95% of the query sequence.
2. there is only one mismatch and the alignment length is > 95% of the query sequence.
The analysis uses blastn v2.2.28+ with the following arguments "-outfmt 6 -dust no -word_size 16 -task megablast -evalue 1e-08".
BLAST matches for experiment VC_MNSC3_2012_384
Select link to view match in Ensembl Plant.
| Query | Reference Contig | position |
| 11_10003 | 6H | 109120105 |
| 11_10025 | 7H | 19591102 |
| 11_10030 | 1H | 13590934 |
| 11_10040 | 6H | 490060558 |
| 11_10041 | 1H | 552906938 |
| 11_10065 | 2H | 723372150 |
| 11_10075 | 1H | 355336510 |
| 11_10078 | 7H | 636617013 |
| 11_10081 | 3H | 35229528 |
| 11_10109 | 2H | 718882008 |
| 11_10129 | 6H | 30807567 |
| 11_10130 | 7H | 310311500 |
| 11_10136 | 6H | 16749731 |
| 11_10143 | 7H | 537951420 |
| 11_10169 | 7H | 597748994 |
| 11_10186 | 1H | 17570165 |
| 11_10196 | 2H | 636433774 |
| 11_10208 | 4H | 2789843 |
| 11_10214 | 2H | 672009556 |
| 11_10221 | 4H | 12270849 |
| 11_10239 | 6H | 564086003 |
| 11_10253 | 3H | 591895583 |
| 11_10270 | 6H | 407357254 |
| 11_10279 | 1H | 481938296 |
| 11_10303 | 7H | 532185376 |
| 11_10307 | Un | 176041655 |
| 11_10309 | 4H | 581788124 |
| 11_10326 | 2H | 3326203 |
| 11_10398 | 2H | 685490222 |
| 11_10401 | 5H | 664997600 |
| 11_10427 | 6H | 28346329 |
| 11_10454 | 7H | 639840882 |
| 11_10460 | 1H | 2579017 |
| 11_10467 | 4H | 578445094 |
| 11_10523 | 4H | 586901572 |
| 11_10525 | 2H | 49988534 |
| 11_10526 | 1H | 64113901 |
| 11_10534 | 7H | 448912368 |
| 11_10539 | 6H | 48979750 |
| 11_10551 | 2H | 738841667 |
| 11_10552 | 1H | 419381787 |
| 11_10578 | 5H | 536448463 |
| 11_10580 | 5H | 19792822 |
| 11_10586 | 1H | 538423095 |
| 11_10588 | 4H | 604442927 |
| 11_10600 | 5H | 649232960 |
| 11_10621 | 5H | 23246071 |
| 11_10631 | 3H | 660938022 |
| 11_10638 | 2H | 100641976 |
| 11_10639 | 4H | 544748028 |
| 11_10669 | 6H | 965879 |
| 11_10676 | 6H | 21816820 |
| 11_10686 | 1H | 476365128 |
| 11_10688 | 5H | 16277132 |
| 11_10695 | Un | 56732627 |
| 11_10705 | 5H | 597797164 |
| 11_10722 | 1H | 539492243 |
| 11_10724 | 4H | 596447073 |
| 11_10744 | 1H | 18807356 |
| 11_10760 | 1H | 23815813 |
| 11_10780 | 2H | 710843212 |
| 11_10783 | 5H | 598250952 |
| 11_10787 | 2H | 38368594 |
| 11_10793 | 4H | 45245669 |
| 11_10798 | 1H | 435096952 |
| 11_10854 | 1H | 533708596 |
| 11_10869 | 5H | 646684592 |
| 11_10896 | 7H | 645016449 |
| 11_10900 | 2H | 687072769 |
| 11_10901 | 5H | 629115072 |
| 11_10926 | 3H | 434842337 |
| 11_10974 | 5H | 9859265 |
| 11_10994 | 6H | 24667457 |
| 11_11004 | 4H | 584339243 |
| 11_11014 | 7H | 67727614 |
| 11_11016 | 3H | 479845259 |
| 11_11021 | 3H | 590764794 |
| 11_11038 | 1H | 544586370 |
| 11_11040 | 2H | 20661304 |
| 11_11048 | 5H | 12380644 |
| 11_11067 | 6H | 404560107 |
| 11_11086 | 3H | 219956193 |
| 11_11098 | 7H | 98043395 |
| 11_11111 | 6H | 578867997 |
| 11_11114 | 4H | 459813388 |
| 11_11141 | 3H | 639130085 |
| 11_11147 | 6H | 536786820 |
| 11_11213 | 4H | 600035002 |
| 11_11216 | 5H | 644058548 |
| 11_11243 | 7H | 623438216 |
| 11_11244 | 4H | 476286851 |
| 11_11290 | 5H | 535623343 |
| 11_11299 | 4H | 632171834 |
| 11_11314 | 3H | 534247279 |
| 11_11349 | 6H | 506921781 |
| 11_11350 | 5H | 553412544 |
| 11_11355 | 5H | 527152265 |
| 11_11380 | 2H | 743219980 |
| 11_11381 | 5H | 4734215 |
| 11_11391 | 3H | 514755234 |
| 11_11405 | 4H | 54542552 |
| 11_11458 | 6H | 527406890 |
| 11_11479 | 6H | 12015182 |
| 11_11484 | 1H | 349489471 |
| 11_11490 | 5H | 625357285 |
| 11_11513 | 4H | 574543534 |
| 11_11516 | 3H | 688380435 |
| 11_20005 | 6H | 574051819 |
| 11_20010 | 5H | 6354602 |
| 11_20012 | 4H | 32413102 |
| 11_20021 | 1H | 526705451 |
| 11_20058 | 6H | 443897804 |
| 11_20092 | 7H | 607662553 |
| 11_20100 | Un | 78078638 |
| 11_20103 | 7H | 593169091 |
| 11_20104 | 5H | 624403379 |
| 11_20114 | 4H | 35787768 |
| 11_20119 | 4H | 620872317 |
| 11_20134 | 5H | 556603279 |
| 11_20159 | 3H | 3981157 |
| 11_20170 | 7H | 654900536 |
| 11_20172 | 3H | 14955141 |
| 11_20182 | 2H | 704890469 |
| 11_20189 | 5H | 657005491 |
| 11_20192 | 7H | 33043618 |
| 11_20197 | 4H | 595772102 |
| 11_20206 | 5H | 3924393 |
| 11_20220 | 1H | 525407362 |
| 11_20226 | 5H | 2540710 |
| 11_20236 | 5H | 509768671 |
| 11_20239 | 5H | 373454403 |
| 11_20245 | 7H | 12860086 |
| 11_20252 | 3H | 3868857 |
| 11_20266 | Un | 95056833 |
| 11_20293 | 2H | 196891840 |
| 11_20349 | 7H | 516840406 |
| 11_20355 | 6H | 562812969 |
| 11_20358 | 4H | 601707793 |
| 11_20361 | 4H | 511458393 |
| 11_20367 | 5H | 501849882 |
| 11_20383 | 1H | 547250913 |
| 11_20384 | 4H | 607800862 |
| 11_20388 | 5H | 619075706 |
| 11_20415 | 6H | 12662384 |
| 11_20422 | 4H | 18759288 |
| 11_20432 | 1H | 451731100 |
| 11_20449 | 5H | 547243067 |
| 11_20454 | 4H | 622965542 |
| 11_20521 | 3H | 543137369 |
| 11_20528 | 2H | 621115373 |
| 11_20533 | 5H | 5617158 |
| 11_20545 | 5H | 630052019 |
| 11_20580 | 4H | 569760181 |
| 11_20590 | 2H | 733665592 |
| 11_20594 | 1H | 554604184 |
| 11_20595 | 3H | 11725096 |
| 11_20617 | 1H | 22567867 |
| 11_20642 | 1H | 451995800 |
| 11_20646 | 5H | 636606382 |
| 11_20656 | 6H | 151845854 |
| 11_20657 | 1H | 484964797 |
| 11_20673 | 6H | 502536025 |
| 11_20686 | 5H | 644819915 |
| 11_20690 | 2H | 587894696 |
| 11_20712 | 1H | 15607330 |
| 11_20714 | 6H | 495778737 |
| 11_20715 | 2H | 731304950 |
| 11_20734 | 2H | 631621499 |
| 11_20742 | 3H | 17409777 |
| 11_20755 | 7H | 15830059 |
| 11_20765 | 4H | 601568256 |
| 11_20777 | 4H | 19930065 |
| 11_20795 | 5H | 557081865 |
| 11_20810 | 1H | 364313610 |
| 11_20826 | 5H | 642764922 |
| 11_20833 | 2H | 615300103 |
| 11_20840 | 1H | 555426553 |
| 11_20844 | 1H | 525478648 |
| 11_20845 | 5H | 24737426 |
| 11_20851 | 3H | 656335837 |
| 11_20864 | 2H | 38834908 |
| 11_20868 | Un | 93085224 |
| 11_20889 | 6H | 522942050 |
| 11_20894 | 5H | 1070678 |
| 11_20895 | 2H | 727211279 |
| 11_20897 | 5H | 657884383 |
| 11_20903 | 5H | 34677472 |
| 11_20904 | Un | 93753935 |
| 11_20936 | 6H | 34020677 |
| 11_20944 | 3H | 629156883 |
| 11_20968 | 3H | 24951816 |
| 11_20972 | 6H | 547258865 |
| 11_20974 | 4H | 627962516 |
| 11_20996 | 6H | 545781074 |
| 11_21038 | 1H | 537362806 |
| 11_21048 | 1H | 19370549 |
| 11_21052 | 5H | 661973771 |
| 11_21053 | 1H | 403309609 |
| 11_21065 | 5H | 9600389 |
| 11_21069 | 6H | 229164917 |
| 11_21111 | 4H | 623900388 |
| 11_21112 | 6H | 578734148 |
| 11_21126 | 1H | 479986322 |
| 11_21155 | 5H | 659838844 |
| 11_21174 | 1H | 7137635 |
| 11_21201 | 7H | 580563012 |
| 11_21202 | 5H | 4183705 |
| 11_21217 | 1H | 379465848 |
| 11_21220 | 2H | 711230478 |
| 11_21223 | 7H | 641762860 |
| 11_21229 | 7H | 628369772 |
| 11_21241 | 5H | 600459885 |
| 11_21246 | 6H | 16478005 |
| 11_21250 | 2H | 742246932 |
| 11_21265 | 2H | 34864969 |
| 11_21266 | 3H | 666091295 |
| 11_21272 | 3H | 667178220 |
| 11_21280 | 7H | 641309802 |
| 11_21281 | 6H | 38242974 |
| 11_21304 | 2H | 42238196 |
| 11_21338 | 2H | 58184762 |
| 11_21370 | 2H | 718628790 |
| 11_21377 | 2H | 11188932 |
| 11_21397 | 4H | 23879683 |
| 11_21400 | Un | 53421763 |
| 11_21418 | 4H | 19183790 |
| 11_21426 | 5H | 9862051 |
| 11_21436 | 2H | 749741789 |
| 11_21437 | 7H | 16563587 |
| 11_21448 | 7H | 576344943 |
| 11_21453 | 2H | 755079198 |
| 11_21455 | 6H | 571737578 |
| 11_21480 | Un | 75877481 |
| 11_21491 | 7H | 53441694 |
| 11_21521 | 6H | 343390 |
| 11_21528 | 7H | 49445658 |
| 12_10079 | 5H | 378886729 |
| 12_10122 | 3H | 650644517 |
| 12_10181 | 2H | 744274485 |
| 12_10218 | 7H | 40109823 |
| 12_10241 | 7H | 609661972 |
| 12_10333 | 5H | 619075925 |
| 12_10447 | 2H | 742025697 |
| 12_10485 | 2H | 181669695 |
| 12_10506 | 1H | 243566375 |
| 12_10507 | 5H | 562730312 |
| 12_10545 | 2H | 589927284 |
| 12_10554 | 6H | 14330320 |
| 12_10571 | 3H | 14011512 |
| 12_10605 | 7H | 80785256 |
| 12_10636 | 1H | 4285541 |
| 12_10650 | 2H | 622887903 |
| 12_10857 | 5H | 668031986 |
| 12_10859 | 2H | 645202515 |
| 12_10860 | 4H | 27327299 |
| 12_10905 | 1H | 529829695 |
| 12_10959 | 7H | 66195606 |
| 12_10960 | 1H | 463802424 |
| 12_10979 | 7H | 48001348 |
| 12_11154 | 3H | 654554805 |
| 12_11173 | 1H | 517251616 |
| 12_11272 | 2H | 119984321 |
| 12_11433 | 7H | 11307664 |
| 12_11450 | 5H | 651487083 |
| 12_11477 | 7H | 261448913 |
| 12_11496 | 1H | 551836652 |
| 12_11498 | 1H | 31354146 |
| 12_20489 | 2H | 639062553 |
| 12_21376 | 3H | 670203243 |
| 12_30006 | 4H | 646103540 |
| 12_30043 | 1H | 317349862 |
| 12_30055 | 3H | 693425600 |
| 12_30064 | 3H | 54793358 |
| 12_30067 | 5H | 592509324 |
| 12_30084 | 3H | 634076447 |
| 12_30102 | 2H | 764420842 |
| 12_30113 | 3H | 14833004 |
| 12_30117 | 4H | 618679930 |
| 12_30144 | 6H | 384884951 |
| 12_30155 | 2H | 16221898 |
| 12_30164 | 7H | 617016393 |
| 12_30178 | 2H | 632678794 |
| 12_30199 | 7H | 522445562 |
| 12_30223 | 3H | 627767267 |
| 12_30277 | 1H | 552452412 |
| 12_30298 | 1H | 469802176 |
| 12_30317 | 6H | 46946031 |
| 12_30338 | 2H | 113453382 |
| 12_30361 | 6H | 30508253 |
| 12_30363 | 2H | 59217137 |
| 12_30368 | 7H | 620484857 |
| 12_30380 | 7H | 635735954 |
| 12_30382 | 5H | 668395874 |
| 12_30396 | 2H | 728830847 |
| 12_30400 | 5H | 618182978 |
| 12_30410 | 5H | 23918425 |
| 12_30414 | 6H | 576542953 |
| 12_30474 | 3H | 63807754 |
| 12_30494 | 5H | 656392750 |
| 12_30496 | 7H | 116658838 |
| 12_30511 | 6H | 276433017 |
| 12_30521 | 6H | 29458421 |
| 12_30528 | 7H | 52802568 |
| 12_30530 | 7H | 23576066 |
| 12_30540 | 4H | 7870312 |
| 12_30545 | 7H | 58416963 |
| 12_30566 | 5H | 642241089 |
| 12_30571 | 3H | 28161638 |
| 12_30573 | 6H | 519372817 |
| 12_30577 | 5H | 659532782 |
| 12_30604 | 2H | 90008552 |
| 12_30605 | 4H | 461460469 |
| 12_30630 | 7H | 593307016 |
| 12_30635 | 5H | 603612830 |
| 12_30636 | 2H | 712677252 |
| 12_30697 | 6H | 22239874 |
| 12_30703 | 2H | 71400580 |
| 12_30736 | 3H | 687519613 |
| 12_30742 | 1H | 458646216 |
| 12_30751 | 6H | 66011069 |
| 12_30755 | 4H | 555556788 |
| 12_30759 | 5H | 629295778 |
| 12_30764 | 4H | 1302636 |
| 12_30767 | 3H | 678513370 |
| 12_30769 | 5H | 657853805 |
| 12_30782 | 6H | 92409121 |
| 12_30788 | 3H | 524982906 |
| 12_30818 | 3H | 9095803 |
| 12_30826 | 7H | 654411756 |
| 12_30833 | 5H | 611999790 |
| 12_30880 | 7H | 67729137 |
| 12_30900 | 2H | 652031655 |
| 12_30920 | 3H | 23189958 |
| 12_30921 | 3H | 673188759 |
| 12_30929 | 5H | 599134827 |
| 12_30940 | 6H | 512160455 |
| 12_30948 | 1H | 12554357 |
| 12_30951 | 1H | 9161623 |
| 12_30956 | 6H | 583345643 |
| 12_30958 | 5H | 666823127 |
| 12_30976 | 5H | 2570921 |
| 12_30979 | 5H | 2540280 |
| 12_30988 | 4H | 623117135 |
| 12_30994 | 4H | 578977449 |
| 12_31020 | 2H | 616918952 |
| 12_31094 | 5H | 5799875 |
| 12_31095 | 2H | 707538666 |
| 12_31126 | 6H | 573497440 |
| 12_31138 | 4H | 631306280 |
| 12_31166 | 7H | 642081131 |
| 12_31177 | 1H | 28643782 |
| 12_31224 | 2H | 6420971 |
| 12_31235 | 6H | 542063070 |
| 12_31262 | 3H | 567974349 |
| 12_31276 | 1H | 20336402 |
| 12_31282 | 7H | 638689409 |
| 12_31285 | 7H | 16918186 |
| 12_31292 | 5H | 662812565 |
| 12_31308 | 6H | 22810044 |
| 12_31313 | 4H | 24251091 |
| 12_31346 | 3H | 550212338 |
| 12_31350 | 7H | 6314541 |
| 12_31352 | 5H | 659736826 |
| 12_31356 | 3H | 540867182 |
| 12_31362 | 4H | 580170313 |
| 12_31375 | 5H | 636962193 |
| 12_31377 | 1H | 540278363 |
| 12_31428 | 3H | 1367441 |
| 12_31450 | 7H | 14185696 |
| 12_31458 | 4H | 6500728 |
| 12_31474 | 2H | 110194176 |
| 12_31491 | 7H | 641613113 |
| 12_31509 | 6H | 203509034 |
| 12_31524 | 4H | 29429150 |