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Marker Annotation Report

This analysis shows the results of using BLAST to match the markers sequence in the T3 database to the the wheat genome sequence.
The BLAST results link to GBrowse URGI and Ensembl genome browsers. The top level page gives a summary of the matching markers for each experiment.
Select the match link to view the BLAST hits for each experiment.

Methods: A marker is identified as a match if either
1. the sequence homology is > 99% and aligment length is > 95% of the query sequence.
2. there is only one mismatch and the alignment length is > 95% of the query sequence.
The analysis uses blastn v2.2.28+ with the following arguments "-outfmt 6 -dust no -word_size 16 -task megablast -evalue 1e-08".

BLAST matches for experiment VC_MNSC2_2011_384
Select link to view match in Ensembl Plant.

QueryReference Contigposition
11_100036H109120105
11_100257H19591102
11_100301H13590934
11_100406H490060558
11_100411H552906938
11_100652H723372150
11_100751H355336510
11_100787H636617013
11_100813H35229528
11_101092H718882008
11_101296H30807567
11_101307H310311500
11_101366H16749731
11_101437H537951420
11_101697H597748994
11_101861H17570165
11_101962H636433774
11_102084H2789843
11_102142H672009556
11_102214H12270849
11_102396H564086003
11_102533H591895583
11_102706H407357254
11_102791H481938296
11_103037H532185376
11_10307Un176041655
11_103094H581788124
11_103262H3326203
11_103982H685490222
11_104015H664997600
11_104276H28346329
11_104547H639840882
11_104601H2579017
11_104674H578445094
11_105234H586901572
11_105252H49988534
11_105261H64113901
11_105347H448912368
11_105396H48979750
11_105512H738841667
11_105521H419381787
11_105785H536448463
11_105805H19792822
11_105861H538423095
11_105884H604442927
11_106005H649232960
11_106215H23246071
11_106313H660938022
11_106382H100641976
11_106394H544748028
11_106696H965879
11_106766H21816820
11_106861H476365128
11_106885H16277132
11_10695Un56732627
11_107055H597797164
11_107221H539492243
11_107244H596447073
11_107441H18807356
11_107601H23815813
11_107802H710843212
11_107835H598250952
11_107872H38368594
11_107934H45245669
11_107981H435096952
11_108541H533708596
11_108695H646684592
11_108967H645016449
11_109002H687072769
11_109015H629115072
11_109263H434842337
11_109745H9859265
11_109946H24667457
11_110044H584339243
11_110147H67727614
11_110163H479845259
11_110213H590764794
11_110381H544586370
11_110402H20661304
11_110485H12380644
11_110676H404560107
11_110863H219956193
11_110987H98043395
11_111116H578867997
11_111144H459813388
11_111413H639130085
11_111476H536786820
11_112134H600035002
11_112165H644058548
11_112437H623438216
11_112444H476286851
11_112905H535623343
11_112994H632171834
11_113143H534247279
11_113496H506921781
11_113505H553412544
11_113555H527152265
11_113802H743219980
11_113815H4734215
11_113913H514755234
11_114054H54542552
11_114586H527406890
11_114796H12015182
11_114841H349489471
11_114905H625357285
11_115134H574543534
11_115163H688380435
11_200056H574051819
11_200105H6354602
11_200124H32413102
11_200211H526705451
11_200586H443897804
11_200927H607662553
11_20100Un78078638
11_201037H593169091
11_201045H624403379
11_201144H35787768
11_201194H620872317
11_201345H556603279
11_201593H3981157
11_201707H654900536
11_201723H14955141
11_201822H704890469
11_201895H657005491
11_201927H33043618
11_201974H595772102
11_202065H3924393
11_202201H525407362
11_202265H2540710
11_202365H509768671
11_202395H373454403
11_202457H12860086
11_202523H3868857
11_20266Un95056833
11_202932H196891840
11_203497H516840406
11_203556H562812969
11_203584H601707793
11_203614H511458393
11_203675H501849882
11_203831H547250913
11_203844H607800862
11_203885H619075706
11_204156H12662384
11_204224H18759288
11_204321H451731100
11_204495H547243067
11_204544H622965542
11_205213H543137369
11_205282H621115373
11_205335H5617158
11_205455H630052019
11_205804H569760181
11_205902H733665592
11_205941H554604184
11_205953H11725096
11_206171H22567867
11_206421H451995800
11_206465H636606382
11_206566H151845854
11_206571H484964797
11_206736H502536025
11_206865H644819915
11_206902H587894696
11_207121H15607330
11_207146H495778737
11_207152H731304950
11_207342H631621499
11_207423H17409777
11_207557H15830059
11_207654H601568256
11_207774H19930065
11_207955H557081865
11_208101H364313610
11_208265H642764922
11_208332H615300103
11_208401H555426553
11_208441H525478648
11_208455H24737426
11_208513H656335837
11_208642H38834908
11_20868Un93085224
11_208896H522942050
11_208945H1070678
11_208952H727211279
11_208975H657884383
11_209035H34677472
11_20904Un93753935
11_209366H34020677
11_209443H629156883
11_209683H24951816
11_209726H547258865
11_209744H627962516
11_209966H545781074
11_210381H537362806
11_210481H19370549
11_210525H661973771
11_210531H403309609
11_210655H9600389
11_210696H229164917
11_211114H623900388
11_211126H578734148
11_211261H479986322
11_211555H659838844
11_211741H7137635
11_212017H580563012
11_212025H4183705
11_212171H379465848
11_212202H711230478
11_212237H641762860
11_212297H628369772
11_212415H600459885
11_212466H16478005
11_212502H742246932
11_212652H34864969
11_212663H666091295
11_212723H667178220
11_212807H641309802
11_212816H38242974
11_213042H42238196
11_213382H58184762
11_213702H718628790
11_213772H11188932
11_213974H23879683
11_21400Un53421763
11_214184H19183790
11_214265H9862051
11_214362H749741789
11_214377H16563587
11_214487H576344943
11_214532H755079198
11_214556H571737578
11_21480Un75877481
11_214917H53441694
11_215216H343390
11_215287H49445658
12_100795H378886729
12_101223H650644517
12_101812H744274485
12_102187H40109823
12_102417H609661972
12_103335H619075925
12_104472H742025697
12_104852H181669695
12_105061H243566375
12_105075H562730312
12_105452H589927284
12_105546H14330320
12_105713H14011512
12_106057H80785256
12_106361H4285541
12_106502H622887903
12_108575H668031986
12_108592H645202515
12_108604H27327299
12_109051H529829695
12_109597H66195606
12_109601H463802424
12_109797H48001348
12_111543H654554805
12_111731H517251616
12_112722H119984321
12_114337H11307664
12_114505H651487083
12_114777H261448913
12_114961H551836652
12_114981H31354146
12_204892H639062553
12_213763H670203243
12_300064H646103540
12_300431H317349862
12_300553H693425600
12_300643H54793358
12_300675H592509324
12_300843H634076447
12_301022H764420842
12_301133H14833004
12_301174H618679930
12_301446H384884951
12_301552H16221898
12_301647H617016393
12_301782H632678794
12_301997H522445562
12_302233H627767267
12_302771H552452412
12_302981H469802176
12_303176H46946031
12_303382H113453382
12_303616H30508253
12_303632H59217137
12_303687H620484857
12_303807H635735954
12_303825H668395874
12_303962H728830847
12_304005H618182978
12_304105H23918425
12_304146H576542953
12_304743H63807754
12_304945H656392750
12_304967H116658838
12_305116H276433017
12_305216H29458421
12_305287H52802568
12_305307H23576066
12_305404H7870312
12_305457H58416963
12_305665H642241089
12_305713H28161638
12_305736H519372817
12_305775H659532782
12_306042H90008552
12_306054H461460469
12_306307H593307016
12_306355H603612830
12_306362H712677252
12_306976H22239874
12_307032H71400580
12_307363H687519613
12_307421H458646216
12_307516H66011069
12_307554H555556788
12_307595H629295778
12_307644H1302636
12_307673H678513370
12_307695H657853805
12_307826H92409121
12_307883H524982906
12_308183H9095803
12_308267H654411756
12_308335H611999790
12_308807H67729137
12_309002H652031655
12_309203H23189958
12_309213H673188759
12_309295H599134827
12_309406H512160455
12_309481H12554357
12_309511H9161623
12_309566H583345643
12_309585H666823127
12_309765H2570921
12_309795H2540280
12_309884H623117135
12_309944H578977449
12_310202H616918952
12_310945H5799875
12_310952H707538666
12_311266H573497440
12_311384H631306280
12_311667H642081131
12_311771H28643782
12_312242H6420971
12_312356H542063070
12_312623H567974349
12_312761H20336402
12_312827H638689409
12_312857H16918186
12_312925H662812565
12_313086H22810044
12_313134H24251091
12_313463H550212338
12_313507H6314541
12_313525H659736826
12_313563H540867182
12_313624H580170313
12_313755H636962193
12_313771H540278363
12_314283H1367441
12_314507H14185696
12_314584H6500728
12_314742H110194176
12_314917H641613113
12_315096H203509034
12_315244H29429150
12_315364H568135239

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.