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  T3 Barley Sandbox

Marker Annotation Report

This analysis shows the results of using BLAST to match the markers sequence in the T3 database to the the wheat genome sequence.
The BLAST results link to GBrowse URGI and Ensembl genome browsers. The top level page gives a summary of the matching markers for each experiment.
Select the match link to view the BLAST hits for each experiment.

Methods: A marker is identified as a match if either
1. the sequence homology is > 99% and aligment length is > 95% of the query sequence.
2. there is only one mismatch and the alignment length is > 95% of the query sequence.
The analysis uses blastn v2.2.28+ with the following arguments "-outfmt 6 -dust no -word_size 16 -task megablast -evalue 1e-08".

BLAST matches for experiment 2009BOPA2_AB_Plate5
Select link to view match in Ensembl Plant.

QueryReference Contigposition
12_100143H685402325
12_100165H624444586
12_100224H600583559
12_100324H633842683
12_100345H409087432
12_100352H463231120
12_100367H1867224
12_100516H571854717
12_100534H545849337
12_100634H35787185
12_100716H571463205
12_100743H600264802
12_100775H556603185
12_100795H378886729
12_100884H494330606
12_100897H524390486
12_100911H522834929
12_100992H253188603
12_101003H621113619
12_101033H2487686
12_101051H406340466
12_101143H39504125
12_101223H650644517
12_101257H489497799
12_101343H587004550
12_101405H513289581
12_101491H525014395
12_101512H728830503
12_101542H479255106
12_101553H197517752
12_101562H83591290
12_101591H98741946
12_101642H722462781
12_101661H468278886
12_101704H586907514
12_101714H30754735
12_101733H3865263
12_101795H594976840
12_101812H744274485
12_101883H638688049
12_101954H72688937
12_101981H401043822
12_101996H66485252
12_102011H428364193
12_102035H483242889
12_102053H643457422
12_102061H473879584
12_102071H540810200
12_102103H603092841
12_102153H697989230
12_102187H40109823
12_102192H70575707
12_102227H251131956
12_102285H589901337
12_102302H9838188
12_102333H167103638
12_102351H80265534
12_102417H609661972
12_102575H661998442
12_102645H371035166
12_102677H87946043
12_102687H227074815
12_102714H616748705
12_102735H636773845
12_102786H356677926
12_102847H85700965
12_102962H51222231
12_103001H321396626
12_103065H408380006
12_103083H640645010
12_103131H451118402
12_103141H46538882
12_103225H668721862
12_103302H181208635
12_103335H619075925
12_103374H638274902
12_103443H611561552
12_103456H365305987
12_103474H31158962
12_103487H49105258
12_103627H457219384
12_103675H323065689
12_103687H49105258
12_103697H457219384
12_103714H33956892
12_103741H319003059
12_103757H5739802
12_103787H655345692
12_103913H190503279
12_103926H469167839
12_103936H504512152
12_103954H15277708
12_104037H68760794
12_104067H11210911
12_104085H547771176
12_104101H4312779
12_104201H71544
12_104264H501339584
12_104302H12868393
12_104472H742025697
12_104523H541490133
12_104597H316867142
12_104722H723105312
12_104742H238166195
12_104852H181669695
12_104862H66442025
12_104872H742811663
12_104891H320288065
12_104911H57891012
12_104924H119346869
12_104933H580244064
12_104976H133927877
12_104995H17075384
12_105004H520397587
12_105022H13236386
12_10504Un91144333
12_105053H638509463
12_105061H243566375
12_105075H562730312
12_105085H372542948
12_105305H16941975
12_105323H67560907
12_105351H504804176
12_105423H662369793
12_105437H626516365
12_105452H589927284
12_105485H494239567
12_105546H14330320
12_105582H149783465
12_105624H15522524
12_105643H672922972
12_105713H14011512
12_105756H70919789
12_105792H727570263
12_105817H444623640
12_105833H589722805
12_105916H231527288
12_105922H11634499
12_105966H504918358
12_106057H80785256
12_106074H463386418
12_106093H549471407
12_106136H31201048
12_106157H651008324
12_106232H738343208
12_106264H14733712
12_10629Un42080949
12_106335H510172204
12_106345H506964757
12_106361H4285541
12_106374H490025935
12_106402H539003244
12_106437H610744901
12_106492H676764753
12_106502H622887903
12_106527H610912783
12_106557H218524405
12_106577H82213134
12_106623H611543683
12_106664H620025304
12_106704H599381703
12_106777H641865882
12_106783H457636172
12_106803H625205208
12_106892H669122511
12_106931H543765502
12_106967H62559292
12_106987H226518116
12_10704Un92420592
12_107137H363319046
12_107152H62239304
12_107172H620201601
12_107182H5692055
12_107192H618672370
12_107255H446645320
12_107325H666183574
12_107352H685783859
12_107392H708561161
12_107461H556179932
12_107525H567880978
12_107586H417827179
12_107662H742283917
12_107695H646543760
12_107772H26199616
12_107843H355986205
12_107923H15300443
12_108036H406092255
12_108081H542658567
12_108104H23584087
12_108115H407393114
12_108244H617971329
12_108364H41661715
12_108445H558773419
12_108472H43426649
12_108503H486901931
12_108575H668031986
12_108592H645202515
12_108604H27327299
12_108645H30204455
12_108787H31307271
12_108802H29991973
12_108832H472634333
12_108873H544980519
12_108887H648958897
12_108977H604694388
12_108995H405762562
12_109045H622368516
12_109051H529829695
12_109106H61762369
12_109152H733690794
12_109235H74312905
12_109272H122767846
12_109305H535443089
12_109362H659264767
12_109372H754651628
12_109381H348204358
12_109482H183518398
12_109502H743019283
12_109535H494680404
12_109597H66195606
12_109601H463802424
12_109683H34959733
12_109692H663583331
12_109702H831322
12_109737H636564600
12_109797H48001348
12_109813H696452271
12_109827H488307674
12_110053H7767871
12_110081H509765620
12_110105H651484482
12_110111H5770204
12_110185H656642343
12_110204H4196633
12_110302H7272865
12_110357H9613368
12_110361H320494648
12_110396H136924613
12_110446H309853468
12_110457H160712085
12_110473H655380561
12_110502H759627545
12_110517H595293177
12_110527H19481341
12_110557H514442386
12_110572H47632039
12_110604H15304695
12_110621H461593387
12_110634H467767377
12_110693H95272209
12_110774H161219174
12_110781H487105715
12_110843H503112337
12_110895H455727892
12_110917H503807359
12_110953H15469477
12_110962H592937557
12_111023H122398053
12_111037H153004133
12_11104Un96308787
12_111065H535815622
12_111071H374506358
12_111084H506666213
12_111124H49577531
12_111173H48647187
12_111192H13265983
12_111212H573591858
12_111312H97401187
12_111343H151933879
12_111374H165585751
12_111383H574922989
12_111394H623120121
12_111406H352363141
12_111441H498205662
12_111467H430314726
12_111503H501048067
12_111515H400685477
12_111523H509144774
12_111543H654554805
12_111552H232982469
12_111632H186434939
12_111645H602675826
12_111691H361246413
12_111716H103574937
12_111731H517251616
12_111754H16286996
12_111771H480008477
12_111816H395831106
12_111834H622061976
12_111847H620086504
12_111904H408288251
12_111925H664718043
12_111944H628636387
12_11202Un108038620
12_112083H660844021
12_112091H350423508
12_112171H377359808
12_112324H478924972
12_112334H630508918
12_112354H632622834
12_112373H24778078
12_112427H102937591
12_112455H579324077
12_112525H603456294
12_112536H404557293
12_112547H164884272
12_112553H612797634
12_112577H114751411
12_112653H183696396
12_112661H38549052
12_112671H481468950
12_112694H393774262
12_112711H548713015
12_112722H119984321
12_112742H645380151
12_112782H567404068
12_112797H628540873
12_112843H513352550
12_112852H678098965
12_112882H428231831
12_112953H209728149
12_112973H666297428
12_112985H582297690
12_113004H8627438
12_113011H77984995
12_113042H40287471
12_113097H645251096
12_113103H9095911
12_113111H2477595
12_113154H408440945
12_113162H550843423
12_113185H28150659
12_113216H451547468
12_113223H596522095
12_11324Un21735573
12_113255H636417096
12_113383H632252063
12_113397H52283365
12_113402H68631648
12_113472H559662886
12_113536H144016156
12_113571H30093555
12_113635H421878211
12_113682H743356418
12_113692H465721495
12_113777H463873926
12_113824H31435366
12_113832H746332159
12_113855H315392038
12_113866H437328632
12_113873H142771477
12_113882H641035090
12_113923H615642071
12_113995H120885908
12_114087H206624667
12_114091H530746330
12_11413Un247097632
12_114143H28805649
12_11427Un51717276
12_114282H85104112
12_114293H470815949
12_114337H11307664
12_114343H2701374
12_114376H536723475
12_114385H487284601
12_114426H337182708
12_114431H538890455
12_114441H409518631
12_114492H633663480
12_114505H651487083
12_114522H42237041
12_114543H555352852
12_114556H32260871
12_114571H538694391
12_114625H280034127
12_114631H495128036
12_114662H687350595
12_114683H585500434
12_114725H591697185
12_114756H463863740
12_114777H261448913
12_114854H6003451
12_114876H311591705
12_114927H121490641
12_114934H611212295
12_114946H552247475
12_114961H551836652
12_114981H31354146
12_114997H498937414
12_115042H520773245
12_115087H27772383
12_115103H671372013
12_115113H155123442
12_115125H409578338
12_115155H514828254
12_115173H570789584
12_115183H271769474
12_115243H565095821
12_115257H105100930
12_115264H591927673
12_115273H30445325
12_115297H508668950
12_115355H590273827
12_115367H382557243
12_200067H83279142
12_200114H35090500
12_200167H2527557
12_200272H737033898
12_200317H59577616
12_200373H158717934
12_200455H587053505
12_200595H369571073
12_200797H648429498
12_200903H575068
12_201083H446060674
12_201426H256482492
12_201434H581614604
12_201444H201070769
12_201486H477077711
12_201564H97457045
12_201585H579652491
12_201763H688999137
12_201812H202970639
12_201832H718880739
12_201865H625762261
12_201871H520008962
12_201962H427413180
12_201983H676490428
12_202017H4280866
12_202077H310311355
12_202177H623701825
12_202277H15116301
12_202342H121110746
12_202352H121687707
12_202374H629645765
12_202404H34777219
12_202417H643843283
12_202575H2255929
12_202643H102209568
12_202744H3623098
12_202785H483240956
12_202812H67505674
12_202853H603091673
12_202952H710602882
12_202975H495068087
12_203175H630348435
12_203231H504079731
12_203262H54584401
12_203352H503886204
12_203453H694227911
12_203505H493783822
12_203595H535806634
12_20368Un176040912
12_203693H640567110
12_203816H138555420
12_204035H554289825
12_204067H604527396
12_204077H642285885
12_204133H635417153
12_204165H415425465
12_204213H672215821
12_20424Un18557985
12_204291H558414475
12_204362H693683048
12_204486H563029963
12_204636H383271484
12_204892H639062553
12_205053H672933709
12_205182H741603762
12_205254H414747214
12_205743H114511070
12_205765H17133680
12_205913H286996551
12_205936H29661090
12_205991H553959547
12_206083H511669866
12_206117H593178677
12_206131H520001459
12_206184H9697544
12_206321H511401867
12_206407H643285486
12_206411H52769746
12_206484H603603245
12_206492H708566499
12_206847H605135349
12_206857H549645656
12_206882H88324629
12_206961H469551219
12_207213H403670310
12_207604H637465021
12_207705H28954786
12_207752H767940290
12_207936H349171905
12_208037H37802983
12_208165H651203748
12_208185H495314866
12_208254H603360721
12_208305H613988009
12_208314H366230669
12_208327H628962539
12_208397H3422925
12_208493H559146523
12_208612H510431182
12_208633H501045247
12_208675H648513686
12_208782H294598697
12_208984H508041529
12_20907Un93075348
12_20917Un12158108
12_209267H647186090
12_209497H643844792
12_209544H2795805
12_209815H408795325
12_209852H632316011
12_209892H704374615
12_210034H27328794
12_210095H650753193
12_210167H644457304
12_210193H597613679
12_210201H519268754
12_210294H58804724
12_210365H480242834
12_210492H38602524
12_210643H474830452
12_210813H614291551
12_211051H548967983
12_211146H361523527
12_211157H471268170
12_211174H1290529
12_211285H503900056
12_211311H442735473
12_211355H651947698
12_211374H460079061
12_211575H498810876
12_211677H174323281
12_211721H536786084
12_211761H478861490
12_211865H519248575
12_211943H554384968
12_212087H614318211
12_212347H136408239
12_212683H30377424
12_212882H267304033
12_212905H178785763
12_213197H429840288
12_213287H645344413
12_213372H320307108
12_213453H673761469
12_213565H666825362
12_213725H67614257
12_213763H670203243
12_213863H661418411
12_213935H659698243
12_213962H704060796
12_214081H293656757
12_214113H232458778
12_214152H6193157
12_214424H118867833
12_214496H112007154
12_214504H638051670
12_214584H14102449
12_214612H47445215
12_214625H615848942
12_214631H422892298
12_214647H597504002
12_214706H566570707
12_214715H595217171
12_214753H122397908
12_214762H559106614
12_214776H567546489
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12_214826H351737595
12_214927H164884107
12_214962H762706337
12_214975H535623456
12_215003H692191383
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12_215207H505361650
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12_300015H2896782
12_300023H427506664
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12_300083H528546972
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12_300721H492628827
12_300805H486428493
12_300813H637570778
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12_300875H645679176
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12_300923H648171173
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12_300963H634923676
12_300972H713705600
12_300985H554917695
12_301022H764420842
12_301055H55775968
12_301062H727956635
12_301082H556024145
12_301095H329004926
12_301101H374864785
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12_301163H660845054
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12_301193H613632191
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12_301226H28175037
12_301257H125599000
12_301263H360097463
12_301295H595412293
12_301303H261024159
12_301322H5332673
12_301336H59558362
12_301353H695935673
12_301364H583582367
12_301373H658331074
12_301384H607442185
12_301404H2271660
12_301417H31380476
12_301424H611480536
12_301437H48203463
12_301446H384884951
12_301452H27043400
12_301464H633384580
12_301471H478177990
12_301486H521672593
12_301497H87929896
12_301504H9579405
12_301516H546833011
12_301522H713108233
12_301533H426108000
12_301541H544907775
12_301552H16221898
12_301584H620533072
12_301625H638951179
12_301635H254000
12_301647H617016393
12_301655H634446510
12_301667H651732990
12_301675H9252480
12_301687H593143065
12_301695H589121448
12_301703H560321026
12_301782H632678794
12_301792H274546401
12_301817H66021760
12_301825H549909635
12_301835H622959216
12_301866H41138051
12_301874H37742566
12_301911H522448103
12_301923H21019739
12_301935H368181264
12_301952H125233578
12_301972H478418901
12_301997H522445562
12_302002H685385501
12_302033H677235556
12_302041H496437817
12_302052H614418305
12_30206Un24420145
12_302092H147021592
12_302137H460735533
12_302145H366239890
12_302162H677132806
12_302197H32324876
12_302213H18730953
12_302225H604813107
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In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.