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  T3 Barley Sandbox

Marker Annotation Report

This analysis shows the results of using BLAST to match the markers sequence in the T3 database to the the wheat genome sequence.
The BLAST results link to GBrowse URGI and Ensembl genome browsers. The top level page gives a summary of the matching markers for each experiment.
Select the match link to view the BLAST hits for each experiment.

Methods: A marker is identified as a match if either
1. the sequence homology is > 99% and aligment length is > 95% of the query sequence.
2. there is only one mismatch and the alignment length is > 95% of the query sequence.
The analysis uses blastn v2.2.28+ with the following arguments "-outfmt 6 -dust no -word_size 16 -task megablast -evalue 1e-08".

BLAST matches for experiment POPA1-2_CAPcore
Select link to view match in Ensembl Plant.

QueryReference Contigposition
11_100021H458109745
11_100036H109120105
11_100053H489991522
11_100061H480448307
11_100083H319229522
11_100104H555814805
11_100113H438235261
11_100122H219489966
11_100136H46541683
11_100156H552729604
11_100172H246071968
11_100236H16132371
11_100245H557857271
11_100257H19591102
11_100263H28807967
11_100284H96772013
11_100301H13590934
11_100314H20179491
11_100406H490060558
11_100411H552906938
11_100431H456852946
11_100443H632908903
11_100455H592507654
11_100464H480839137
11_100473H552742686
11_100484H36724107
11_100507H78305253
11_100524H545849890
11_100555H236531993
11_100567H41835408
11_10057Un21847126
11_100585H280612563
11_100616H31142038
11_100646H15802022
11_100652H723372150
11_100697H492206525
11_100702H202976499
11_100722H751886787
11_100737H419567362
11_100751H355336510
11_100787H636617013
11_100805H615400118
11_100813H35229528
11_100837H221348148
11_100852H758851055
11_100904H582935043
11_100934H97456359
11_100945H579653238
11_100955H601142082
11_101076H570019236
11_101092H718882008
11_101111H520009568
11_101123H11039299
11_101134H9730243
11_101157H422941634
11_101165H106968082
11_101206H1361796
11_101217H4282216
11_101234H630859299
11_101246H492317889
11_101275H505799623
11_101282H697193072
11_101296H30807567
11_101307H310311500
11_101324H15274698
11_101366H16749731
11_101373H238600463
11_101382H677197316
11_101396H550448907
11_101437H537951420
11_101465H594548180
11_101472H121110693
11_101504H629645729
11_101537H110445324
11_101575H167339408
11_101583H493556239
11_101615H631251337
11_101656H14306449
11_101675H513141229
11_101697H597748994
11_101723H529840580
11_101747H654413172
11_101761H420656713
11_101775H214882696
11_101782H48475931
11_101827H628806795
11_101835H505672865
11_101843H606945320
11_101856H529879937
11_101861H17570165
11_101896H439399099
11_101912H532288289
11_101942H528069469
11_101962H636433774
11_102026H541830530
11_102084H2789843
11_102097H260601434
11_102132H654161251
11_102142H672009556
11_102162H32348573
11_102175H623995670
11_102206H527476378
11_102214H12270849
11_102234H11219316
11_102243H423198950
11_102253H449665313
11_102276H359588787
11_102327H33030625
11_102342H90243000
11_102365H656515293
11_102381H27866545
11_102396H564086003
11_102405H219454860
11_102432H526175683
11_10244Un97995117
11_102474H585200008
11_102515H636798663
11_102525H199522599
11_102533H591895583
11_102545H652246346
11_102567H217287328
11_102591H61118929
11_102605H38558392
11_102614H59520368
11_102624H484881273
11_102632H697331699
11_102652H608625407
11_102694H636352588
11_102706H407357254
11_102751H36687000
11_102763H544421660
11_102791H481938296
11_102803H638623189
11_102813H499361359
11_102833H694263172
11_102872H651372755
11_102897H635331620
11_10292Un77950893
11_102931H385757324
11_102941H59789397
11_102972H83431627
11_102997H126298543
11_103017H590487359
11_103021H447580367
11_103037H532185376
11_10307Un176041655
11_103094H581788124
11_103105H661443694
11_103123H622816911
11_103152H740894659
11_103172H383104840
11_103185H205923464
11_103194H5074747
11_103236H341712225
11_103241H397171463
11_103252H108479511
11_103262H3326203
11_103277H47582507
11_103283H294750664
11_103292H755321963
11_103316H529091969
11_103344H623749533
11_103353H517015889
11_103365H637433297
11_103381H532951827
11_103433H694855059
11_103467H70162054
11_103493H423371382
11_103503H542983380
11_103522H699755569
11_103556H41458908
11_103571H517540377
11_103582H212172560
11_103605H588903192
11_103635H620203427
11_103653H374141070
11_103707H348272917
11_103733H496167125
11_103762H725655512
11_103776H383275596
11_103794H435363347
11_103803H142551916
11_103813H651809038
11_103832H723653192
11_103855H630712927
11_103874H644449830
11_103906H580308091
11_103947H240518944
11_103961H511924294
11_103982H685490222
11_103992H50467754
11_104006H540177545
11_104015H664997600
11_104042H708297390
11_104055H657266491
11_104072H616918739
11_104094H3772116
11_104114H424870308
11_104145H552512589
11_104191H4153868
11_10422Un11873671
11_104233H689251480
11_104244H292267514
11_104276H28346329
11_104292H704365928
11_104317H110757927
11_104324H68389188
11_104331H508780596
11_104341H491927378
11_104362H542670441
11_104373H367114778
11_104381H303519071
11_104427H506517884
11_104431H558025045
11_104443H580441378
11_104462H716480871
11_104517H31340804
11_104547H639840882
11_104556H479036528
11_104563H336344697
11_104601H2579017
11_104616H56162524
11_104626H41299134
11_104661H488718754
11_104674H578445094
11_104696H512008755
11_104701H92433217
11_104711H496933333
11_104752H656414034
11_104775H565888314
11_104804H437167992
11_104815H236655724
11_104904H6225206
11_104946H35207872
11_104966H543914605
11_104982H82437223
11_105011H11165966
11_10509Un52327655
11_105104H623209165
11_105136H374876068
11_105153H606323507
11_105161H456593344
11_105185H544831172
11_105201H376489575
11_105215H597317333
11_105226H342712322
11_105234H586901572
11_105245H534122699
11_105252H49988534
11_105261H64113901
11_105274H507100104
11_105285H8098028
11_105317H502239891
11_105347H448912368
11_105365H630531598
11_105382H707452624
11_105396H48979750
11_105477H651216818
11_105507H641788307
11_105512H738841667
11_105521H419381787
11_105575H616404116
11_105593H23094350
11_105653H17613152
11_105662H739142893
11_105684H480893354
11_105703H659694975
11_105744H11770361
11_105767H46106073
11_105774H69380591
11_105785H536448463
11_105805H19792822
11_105825H632548119
11_105843H624282646
11_105861H538423095
11_105884H604442927
11_105895H623949597
11_105901H555618219
11_105935H646304665
11_105956H548251353
11_105971H37114410
11_106005H649232960
11_106013H54950033
11_106022H197904597
11_106064H558683988
11_106086H527210149
11_106104H638202451
11_106114H633173997
11_106144H623124965
11_106171H434757334
11_106192H647661677
11_106203H413469543
11_106215H23246071
11_106225H552728210
11_106242H226796699
11_106252H738362548
11_106274H568135184
11_106283H579748358
11_106302H689377321
11_106313H660938022
11_106322H544617620
11_106356H546608851
11_106382H100641976
11_106394H544748028
11_106415H482426682
11_106441H541351026
11_106463H676624509
11_106482H52786444
11_106512H606128866
11_106533H482733260
11_106541H4657144
11_106562H720349512
11_106585H609154093
11_106596H181330195
11_106615H305528375
11_106674H350266227
11_106684H46140224
11_106696H965879
11_106715H424593878
11_106723H32615445
11_106737H496530179
11_106766H21816820
11_106792H165634831
11_106813H683876412
11_106827H2212170
11_106833H549071802
11_106852H516165724
11_106861H476365128
11_106877H639922341
11_106885H16277132
11_106922H542984508
11_106943H684467546
11_10695Un56732627
11_106974H633602081
11_107007H428682740
11_107023H681332144
11_107055H597797164
11_107072H707268000
11_107103H35266121
11_107124H630904023
11_107142H742203860
11_107217H75226809
11_107221H539492243
11_107234H599232360
11_107244H596447073
11_107267H63748630
11_107283H491895585
11_107291H530180226
11_107312H701963123
11_107332H107638923
11_107346H550311112
11_107365H656077276
11_107384H10019019
11_107415H631586711
11_107441H18807356
11_107473H590807078
11_107486H574761427
11_107496H322885901
11_107502H487263991
11_107514H604403847
11_10753Un40990529
11_107543H632915185
11_107555H606302357
11_107564H63865143
11_107571H18359684
11_107601H23815813
11_107641H34087686
11_107673H690418421
11_107681H406535168
11_107702H755005509
11_107715H545101351
11_107727H59719498
11_107737H413074968
11_10775Un554832
11_107785H648410579
11_107802H710843212
11_107816H477163617
11_107835H598250952
11_107854H612082524
11_107862H645594827
11_107872H38368594
11_107891H527800153
11_107912H750535067
11_107934H45245669
11_107962H192278372
11_107977H635305241
11_107981H435096952
11_107996H25149597
11_108055H590124633
11_108074H496748272
11_108094H489254555
11_108133H534070384
11_108141H23923839
11_108156H538088490
11_108176H47366298
11_108182H636549210
11_108195H609200677
11_108205H629528876
11_108213H633085996
11_108232H647456940
11_108253H36786737
11_108262H737661735
11_108286H576044420
11_108294H579450177
11_108331H351868939
11_108345H559204073
11_108372H51957324
11_108387H40735883
11_108393H510245868
11_108405H423881193
11_108417H14802282
11_108423H641758598
11_108437H642028895
11_108455H605405791
11_108464H563098102
11_108486H325372251
11_108517H16886316
11_108537H607946012
11_108541H533708596
11_108555H603086611
11_108565H195772324
11_108633H39453881
11_108673H633641840
11_108686H16876562
11_108695H646684592
11_108705H651947785
11_108731H14374682
11_108762H682222549
11_108814H471656963
11_108826H34582877
11_108857H638912980
11_108863H10689004
11_108901H482241183
11_108912H36438267
11_108933H684178920
11_108947H4103904
11_108951H479172
11_108967H645016449
11_109002H687072769
11_109015H629115072
11_109025H631203604
11_109031H545323191
11_109092H545242939
11_109111H536146950
11_109135H231082339
11_109144H511791369
11_109162H708638025
11_109183H630722599
11_109192H52014030
11_109207H29716819
11_109247H231059190
11_109253H411949429
11_109263H434842337
11_109331H381326003
11_109353H678512385
11_109424H94604607
11_109432H21582733
11_109464H469625104
11_109472H267303750
11_109497H1263440
11_109522H631976772
11_109555H46960961
11_109567H31741820
11_109571H76992307
11_109626H128470478
11_109646H428607786
11_109657H26447530
11_109663H416613563
11_109717H629696
11_109745H9859265
11_109772H703931996
11_109786H547081024
11_109837H167862263
11_109851H116969279
11_109872H38600279
11_109882H702028528
11_109892H702156085
11_109902H702100845
11_109946H24667457
11_109955H146462242
11_109962H119871880
11_109972H132767421
11_109997H650404231
11_110023H47570630
11_110044H584339243
11_110147H67727614
11_110152H115322334
11_110163H479845259
11_110194H642561173
11_110213H590764794
11_110232H742092700
11_110245H293388505
11_110287H109383022
11_110317H8172607
11_110371H490454901
11_110381H544586370
11_110402H20661304
11_110424H420743634
11_110432H701937365
11_110462H205975238
11_110485H12380644
11_110491H435402973
11_110542H91940117
11_110582H664803009
11_110592H9658541
11_110612H70642845
11_110641H80434237
11_110664H633042658
11_110676H404560107
11_110687H38487036
11_110704H551857393
11_110715H606531778
11_110722H570919247
11_110732H50233842
11_11075Un136458606
11_110805H598917589
11_110863H219956193
11_110905H595217199
11_110925H610690129
11_110942H693684636
11_110976H47978634
11_110987H98043395
11_110993H226364211
11_111002H649204195
11_111012H224821659
11_111051H551573705
11_111102H40314202
11_111116H578867997
11_111144H459813388
11_111182H702542345
11_111227H148765408
11_111243H354288728
11_111253H402907880
11_111273H652305192
11_111285H363393417
11_111327H2213381
11_111332H185517764
11_111364H13713022
11_111413H639130085
11_111457H410017106
11_111476H536786820
11_111536H351737563
11_111595H444549240
11_111621H114814613
11_111723H632247129
11_111782H373690428
11_111797H7044993
11_111804H37600756
11_111855H629948107
11_111864H639342632
11_111876H573389448
11_111891H503413212
11_111913H504750960
11_111963H640357048
11_111985H74274268
11_111994H13300813
11_112056H91401417
11_112062H508786535
11_112074H529292786
11_112112H393522056
11_112134H600035002
11_112142H647135854
11_112165H644058548
11_112197H440745784
11_112215H315127052
11_112227H7465605
11_112231H1025676
11_112244H560337783
11_112294H559759882
11_112362H705262924
11_112397H501750469
11_11240Un69784262
11_112413H538660122
11_112437H623438216
11_112444H476286851
11_112466H529857482
11_112495H484879282
11_112502H682243810
11_112561H390692993
11_112583H198409081
11_112605H349702859
11_112616H477433614
11_112622H737639570
11_112735H563474890
11_112757H645922066
11_112763H556568088
11_112771H513140982
11_112815H228224425
11_112833H367856122
11_112871H322116949
11_112905H535623343
11_112917H413462047
11_112924H620339345
11_112931H57233092
11_112946H545956735
11_112994H632171834
11_113022H96162710
11_113072H678192598
11_113126H228201719
11_113133H149816776
11_113143H534247279
11_113194H582089123
11_113203H692191192
11_113232H692056609
11_113261H379650858
11_113283H653294688
11_113296H501893886
11_113303H628031126
11_113324H420308348
11_113361H261773377
11_113373H373635443
11_113415H571057823
11_113437H573239658
11_113454H4314841
11_113462H687239015
11_113487H93153567
11_113496H506921781
11_113505H553412544
11_113527H415119732
11_113542H248552965
11_113555H527152265
11_113591H377780604
11_113615H559673257
11_113645H662755816
11_113652H712330479
11_113671H461403045
11_113755H591828836
11_113802H743219980
11_113815H4734215
11_113842H491105224
11_113913H514755234
11_113943H520181246
11_113984H602782584
11_114002H110245657
11_114013H447065363
11_114022H624194869
11_114054H54542552
11_114066H6770161
11_114103H683294717
11_114113H683722415
11_114302H549098146
11_114314H546808812
11_114325H50388254
11_114352H636292444
11_114363H673608563
11_114407H642430202
11_114415H617104182
11_114457H505361481
11_114485H600139654
11_114533H3691178
11_114565H587890484
11_114586H527406890
11_114596H509042302
11_114617H440018338
11_114645H637381858
11_114695H253948124
11_114704H621948101
11_114735H547115792
11_114781H88883038
11_114796H12015182
11_114802H692437768
11_114811H540810107
11_114836H464858509
11_114841H349489471
11_114862H718986451
11_114886H576407878
11_114895H648004337
11_114905H625357285
11_114957H10416399
11_114975H626697338
11_115004H590917631
11_115013H267704770
11_115023H186950158
11_115033H621816484
11_115052H74603738
11_115065H363522801
11_115075H585152195
11_115091H554277483
11_115134H574543534
11_115163H688380435
11_115217H627297459
11_115222H112202461
11_115281H536947615
11_115303H378660028
11_115325H605593058
11_115332H655112436
11_115346H565615970
12_100143H685402325
12_100165H624444586
12_100224H600583559
12_100324H633842683
12_100345H409087432
12_100352H463231120
12_100367H1867224
12_100516H571854717
12_100534H545849337
12_100634H35787185
12_100716H571463205
12_100743H600264802
12_100775H556603185
12_100795H378886729
12_100884H494330606
12_100897H524390486
12_100911H522834929
12_100992H253188603
12_101003H621113619
12_101033H2487686
12_101051H406340466
12_101143H39504125
12_101223H650644517
12_101257H489497799
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In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.