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  T3 Barley Sandbox

Marker Annotation Report

This analysis shows the results of using BLAST to match the markers sequence in the T3 database to the the wheat genome sequence.
The BLAST results link to GBrowse URGI and Ensembl genome browsers. The top level page gives a summary of the matching markers for each experiment.
Select the match link to view the BLAST hits for each experiment.

Methods: A marker is identified as a match if either
1. the sequence homology is > 99% and aligment length is > 95% of the query sequence.
2. there is only one mismatch and the alignment length is > 95% of the query sequence.
The analysis uses blastn v2.2.28+ with the following arguments "-outfmt 6 -dust no -word_size 16 -task megablast -evalue 1e-08".

BLAST matches for experiment
Select link to view match in Ensembl Plant.

QueryReference Contigposition
11_100156H552729604
11_100245H557857271
11_100431H456852946
11_100473H552742686
11_100484H36724107
11_100646H15802022
11_100813H35229528
11_101076H570019236
11_101537H110445324
11_101583H493556239
11_101615H631251337
11_101747H654413172
11_101896H439399099
11_101962H636433774
11_102026H541830530
11_102084H2789843
11_102142H672009556
11_102175H623995670
11_102206H527476378
11_102253H449665313
11_102276H359588787
11_102365H656515293
11_102591H61118929
11_102751H36687000
11_102972H83431627
11_103017H590487359
11_103105H661443694
11_103635H620203427
11_103707H348272917
11_103733H496167125
11_103762H725655512
11_103776H383275596
11_103947H240518944
11_104006H540177545
11_104042H708297390
11_104191H4153868
11_10422Un11873671
11_104292H704365928
11_104331H508780596
11_104381H303519071
11_104427H506517884
11_104431H558025045
11_104462H716480871
11_104517H31340804
11_104966H543914605
11_104982H82437223
11_105201H376489575
11_105234H586901572
11_105285H8098028
11_105317H502239891
11_105382H707452624
11_105653H17613152
11_105767H46106073
11_105774H69380591
11_105895H623949597
11_105901H555618219
11_106064H558683988
11_106114H633173997
11_106192H647661677
11_106252H738362548
11_106394H544748028
11_106415H482426682
11_106463H676624509
11_106562H720349512
11_106696H965879
11_106723H32615445
11_106737H496530179
11_106885H16277132
11_106943H684467546
11_107023H681332144
11_107072H707268000
11_107103H35266121
11_107332H107638923
11_107365H656077276
11_107415H631586711
11_107486H574761427
11_107641H34087686
11_107934H45245669
11_108141H23923839
11_108182H636549210
11_108232H647456940
11_108253H36786737
11_108262H737661735
11_108345H559204073
11_108372H51957324
11_108437H642028895
11_108464H563098102
11_108537H607946012
11_108541H533708596
11_108686H16876562
11_108814H471656963
11_108826H34582877
11_109002H687072769
11_109015H629115072
11_109025H631203604
11_109192H52014030
11_109207H29716819
11_109247H231059190
11_109263H434842337
11_109657H26447530
11_109872H38600279
11_109997H650404231
11_110044H584339243
11_110163H479845259
11_110402H20661304
11_110976H47978634
11_110987H98043395
11_111116H578867997
11_111227H148765408
11_111332H185517764
11_112142H647135854
11_112231H1025676
11_112244H560337783
11_112294H559759882
11_112362H705262924
11_112397H501750469
11_112495H484879282
11_112905H535623343
11_113232H692056609
11_113303H628031126
11_113671H461403045
11_114013H447065363
11_114066H6770161
11_114103H683294717
11_114113H683722415
11_114314H546808812
11_114352H636292444
11_114617H440018338
11_114645H637381858
11_114781H88883038
11_114796H12015182
11_115004H590917631
11_115052H74603738
11_115091H554277483
11_115163H688380435
11_200056H574051819
11_200093H613898250
11_200124H32413102
11_200134H643005841
11_200573H686033929
11_200586H443897804
11_200785H632298125
11_200894H642587681
11_200975H542621417
11_201045H624403379
11_201072H19588001
11_201144H35787768
11_201251H516309831
11_201325H372359432
11_201381H554760325
11_201593H3981157
11_201623H108142581
11_201723H14955141
11_201784H600671237
11_201804H35548341
11_201822H704890469
11_202057H489497016
11_20211Un92724535
11_202126H5178064
11_202265H2540710
11_202694H72688992
11_202763H469771904
11_202916H67706383
11_203275H552971221
11_203345H640334690
11_203556H562812969
11_20365Un115139269
11_203731H263584
11_203831H547250913
11_203857H607948063
11_203885H619075706
11_203925H485027002
11_204025H668642360
11_204103H36874153
11_204271H314308188
11_204321H451731100
11_204553H25862827
11_204676H560157418
11_20475Un7241982
11_204824H509230439
11_204936H5065058
11_204942H737024225
11_204957H22774581
11_205002H183381488
11_205077H31243155
11_205091H556420880
11_205265H542984300
11_205293H7058538
11_205316H552807238
11_205495H557014868
11_205523H22601987
11_205632H12243677
11_205663H545314204
11_205707H610498605
11_206031H553490762
11_206073H28024941
11_206104H472369069
11_206375H582292797
11_206465H636606382
11_206601H329700313
11_206826H517882968
11_20725Un92479210
11_207404H578447444
11_207423H17409777
11_207466H521667884
11_207721H557125644
11_207943H23309513
11_208101H364313610
11_208287H270644774
11_208356H361066555
11_208505H229928354
11_208642H38834908
11_20868Un93085224
11_208816H486669
11_208857H176154907
11_208866H5362408
11_208896H522942050
11_208937H242564744
11_208952H727211279
11_208975H657884383
11_209117H336286542
11_209121H365007316
11_209151H555460522
11_209244H544139497
11_209366H34020677
11_209394H50778111
11_209443H629156883
11_209561H455813887
11_209683H24951816
11_209696H517938283
11_209966H545781074
11_210072H674314269
11_210245H632099814
11_210256H541489037
11_210354H633031207
11_210415H629445913
11_210481H19370549
11_210525H661973771
11_210734H66861565
11_210882H720580161
11_210951H37694302
11_210992H755094798
11_211085H663400890
11_21191Un52769203
11_212191H458916428
11_212202H711230478
11_212246H524652121
11_212261H7228966
11_212395H482752631
11_212445H437938877
11_212673H687549675
11_212716H560160262
11_212723H667178220
11_212755H480698266
11_213106H441812706
11_213152H712801076
11_213534H584557316
11_213571H352305893
11_213605H619905239
11_213611H380928690
11_213731H509511424
11_213841H551383184
11_213974H23879683
11_214311H453000239
11_214402H716727690
11_214461H508567719
11_214532H755079198
11_214676H570675743
11_214933H612888418
11_214947H348844957
11_215145H619656972
11_215216H343390
11_215287H49445658
12_100143H685402325
12_100165H624444586
12_101257H489497799
12_101996H66485252
12_102187H40109823
12_102227H251131956
12_102575H661998442
12_103225H668721862
12_103335H619075925
12_104264H501339584
12_105305H16941975
12_105546H14330320
12_105756H70919789
12_105792H727570263
12_106623H611543683
12_106987H226518116
12_107525H567880978
12_108115H407393114
12_109683H34959733
12_109827H488307674
12_110105H651484482
12_110634H467767377
12_111691H361246413
12_111944H628636387
12_112083H660844021
12_112553H612797634
12_113682H743356418
12_114143H28805649
12_114505H651487083
12_114997H498937414
12_201434H581614604
12_202374H629645765
12_202404H34777219
12_203262H54584401
12_204213H672215821
12_212087H614318211
12_213763H670203243
12_213863H661418411
12_300015H2896782
12_300064H646103540
12_300075H484377885
12_300093H485716108
12_300407H30545668
12_300481H558226181
12_300492H692526909
12_300506H16160321
12_300537H234663803
12_300604H495699304
12_300625H619890644
12_300637H30198858
12_300985H554917695
12_301101H374864785
12_301163H660845054
12_301181H11498629
12_301364H583582367
12_301437H48203463
12_301497H87929896
12_301625H638951179
12_301655H634446510
12_301835H622959216
12_301923H21019739
12_301997H522445562
12_302394H645030797
12_302411H17000653
12_303297H26188987
12_303361H31676923
12_30352Un30839035
12_303616H30508253
12_303897H354115188
12_303962H728830847
12_304117H262018069
12_304322H54631912
12_304457H315905440
12_304565H565946520
12_304817H228406803
12_304867H235388310
12_304967H116658838
12_30506Un113016235
12_305106H69634463
12_305216H29458421
12_305435H397673
12_305447H238659006
12_305507H285719287
12_305544H618415678
12_305552H691870667
12_305665H642241089
12_305696H115112608
12_305713H28161638
12_305767H66410739
12_305775H659532782
12_305915H3152337
12_305974H52514843
12_305982H710954522
12_306036H17924348
12_306054H461460469
12_306204H550661796
12_306217H361405806
12_306425H636369836
12_306516H7701030
12_306572H50870267
12_306831H69960449
12_306912H92524664
12_306962H635294505
12_307027H31492177
12_307346H563067702
12_307363H687519613
12_307501H380767247
12_307607H228832104
12_307617H640935280
12_307673H678513370
12_307695H657853805
12_307826H92409121
12_307861H380275827
12_307947H231100826
12_307977H617916935
12_308293H493556092
12_308413H670129769
12_308426H14332108
12_308436H16130844
12_308771H13602909
12_309203H23189958
12_309213H673188759
12_309253H33692586
12_309341H557764749
12_309406H512160455
12_309533H36787380
12_309585H666823127
12_309691H977915
12_309747H650019168
12_309755H466893197
12_309775H2571485
12_309805H2540132
12_309967H554189661
12_309977H130414063
12_310113H462627529
12_310235H2754382
12_310446H553204175
12_310486H553203851
12_311156H553623189
12_311207H176885969
12_311235H666455425
12_311266H573497440
12_311441H4653990
12_311484H586675142
12_311655H619632955
12_312052H654960941
12_312081H331415858
12_312092H735228887
12_312117H451634037
12_312157H290901431
12_312277H265489644
12_312642H710953472
12_312813H428567922
12_312842H22398480
12_312974H492500731
12_313057H45118264
12_313517H26826004
12_313536H550500760
12_313563H540867182
12_313685H379059639
12_313747H625633406
12_313811H325808056
12_313933H464907622
12_314283H1367441
12_314527H141857069
12_314612H735736634
12_314671H66850934
12_315003H671180259
12_315154H557437524
12_315293H541045055

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.