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  T3 Barley Sandbox

Marker Annotation Report

This analysis shows the results of using BLAST to match the markers sequence in the T3 database to the the wheat genome sequence.
The BLAST results link to GBrowse URGI and Ensembl genome browsers. The top level page gives a summary of the matching markers for each experiment.
Select the match link to view the BLAST hits for each experiment.

Methods: A marker is identified as a match if either
1. the sequence homology is > 99% and aligment length is > 95% of the query sequence.
2. there is only one mismatch and the alignment length is > 95% of the query sequence.
The analysis uses blastn v2.2.28+ with the following arguments "-outfmt 6 -dust no -word_size 16 -task megablast -evalue 1e-08".

BLAST matches for experiment POPA2_Morex-Barke_Mapping
Select link to view match in Ensembl Plant.

QueryReference Contigposition
11_200014H21424705
11_200023H408772778
11_200035H589368480
11_200056H574051819
11_200074H638109057
11_200085H612229115
11_200093H613898250
11_200105H6354602
11_200124H32413102
11_200134H643005841
11_200147H16621046
11_200156H493226860
11_200173H532386292
11_200185H554666826
11_200204H489816683
11_200211H526705451
11_200225H657768216
11_200233H617763235
11_200296H575071614
11_200322H406850796
11_200392H235963453
11_200427H524825469
11_200471H339656884
11_200526H32052872
11_200536H512159550
11_200573H686033929
11_200586H443897804
11_200607H109656682
11_200624H535955130
11_200633H574657494
11_200642H698901005
11_200724H567760048
11_200747H60573304
11_200785H632298125
11_200802H673846506
11_200837H537251062
11_200853H653287342
11_200862H681044282
11_200894H642587681
11_200927H607662553
11_200933H567582668
11_200951H429810625
11_200965H512127664
11_200975H542621417
11_200992H697367643
11_20100Un78078638
11_201016H121304721
11_201023H394389275
11_201037H593169091
11_201045H624403379
11_201055H383291254
11_201072H19588001
11_201094H19753671
11_201122H18589256
11_201137H62644212
11_201144H35787768
11_201153H559686530
11_201177H648324431
11_201186H546757074
11_201194H620872317
11_201211H482407642
11_201251H516309831
11_201267H39065208
11_201275H583318805
11_201295H130602489
11_201303H600265291
11_201312H115449997
11_201325H372359432
11_201331H541996243
11_201345H556603279
11_201354H488134311
11_201363H585359884
11_201381H554760325
11_201397H640932887
11_201412H714692496
11_201454H1668279
11_201463H652499777
11_201491H509763190
11_201503H693288308
11_201514H510209532
11_201531H516507942
11_201553H672938827
11_201571H467931109
11_201593H3981157
11_201602H246219296
11_201623H108142581
11_201691H516153706
11_201707H654900536
11_201723H14955141
11_201732H47286510
11_201784H600671237
11_201795H255509831
11_201804H35548341
11_201822H704890469
11_201846H384801961
11_201857H654030545
11_201885H599123281
11_201895H657005491
11_201927H33043618
11_201933H39504094
11_201957H111292841
11_201974H595772102
11_202007H354110494
11_202057H489497016
11_202065H3924393
11_202104H15304563
11_20211Un92724535
11_202126H5178064
11_202152H723245814
11_202195H636520182
11_202201H525407362
11_202223H556704475
11_202244H636430559
11_202257H15114736
11_202265H2540710
11_202291H473582513
11_202307H525219484
11_202326H1579056
11_202365H509768671
11_202395H373454403
11_202427H8001693
11_202457H12860086
11_202465H513074796
11_202497H56813710
11_202512H474752381
11_202523H3868857
11_202595H594978246
11_202601H324791460
11_202626H7898920
11_202655H456062406
11_20266Un95056833
11_202694H72688992
11_202724H639755186
11_202733H535465614
11_202763H469771904
11_202835H404959698
11_202876H481001771
11_202883H367111723
11_202894H462325035
11_202901H470389531
11_202916H67706383
11_20292Un92266936
11_202932H196891840
11_202946H7539661
11_202985H594971772
11_203005H589903699
11_203024H16669632
11_203037H843671
11_203065H393288681
11_203077H9914614
11_203095H643434681
11_203117H582033216
11_203147H273952625
11_203156H16697020
11_203205H560732721
11_203245H632384000
11_203253H473173134
11_203275H552971221
11_203283H64126709
11_203296H336379278
11_203325H371035139
11_203333H326704329
11_203345H640334690
11_203366H514099026
11_203393H685223115
11_203402H651058560
11_203426H553622932
11_203433H638622877
11_203466H531939937
11_203475H588765184
11_203497H516840406
11_203513H532381995
11_203547H626292911
11_203556H562812969
11_203563H55590274
11_203577H63936832
11_203584H601707793
11_203614H511458393
11_203623H552901189
11_203634H495854079
11_20365Un115139269
11_203662H720345060
11_203675H501849882
11_203705H445240245
11_203711H13581567
11_203731H263584
11_203742H545240742
11_203755H609073896
11_203796H554872905
11_203831H547250913
11_203844H607800862
11_203857H607948063
11_203865H13846829
11_203872H118999843
11_203885H619075706
11_203902H520261737
11_203925H485027002
11_203942H31787971
11_203965H369237514
11_204025H668642360
11_204093H652157212
11_204103H36874153
11_204114H21415639
11_204124H502029408
11_20414Un114767996
11_204156H12662384
11_204172H254972206
11_204192H625765651
11_204224H18759288
11_204271H314308188
11_204283H341217274
11_204321H451731100
11_204341H497940324
11_204382H535553641
11_204393H323644482
11_204401H17583110
11_204415H475429756
11_204422H547569286
11_204431H547112571
11_204443H436621308
11_204495H547243067
11_204504H492257844
11_204514H568743447
11_204527H642561453
11_204534H525824420
11_204544H622965542
11_204553H25862827
11_204582H240221324
11_204607H440882500
11_204615H266762999
11_204656H532526157
11_204663H441096005
11_204676H560157418
11_204686H498863494
11_204724H494212244
11_20475Un7241982
11_204762H136904247
11_204791H71683
11_204802H715921671
11_204824H509230439
11_204857H539800515
11_204863H417329164
11_204875H598313765
11_204886H518723087
11_204936H5065058
11_204942H737024225
11_204957H22774581
11_204964H402187659
11_204975H540516129
11_204982H687725717
11_205002H183381488
11_205015H413273761
11_205021H1913952
11_205047H649471783
11_205077H31243155
11_205091H556420880
11_205112H711931346
11_205141H37164507
11_205154H622617880
11_205213H543137369
11_205233H622002102
11_205245H265028358
11_205265H542984300
11_205273H647753562
11_205282H621115373
11_205293H7058538
11_205316H552807238
11_205322H513918258
11_205335H5617158
11_205347H6621762
11_205365H650754758
11_205376H582799994
11_205455H630052019
11_205465H645995656
11_205495H557014868
11_205501H498975662
11_205515H608536936
11_205523H22601987
11_205535H1318464
11_205574H10531487
11_205586H564917812
11_205605H635426502
11_205612H754535230
11_205622H12863330
11_205632H12243677
11_205663H545314204
11_205676H336809299
11_205685H617780015
11_205707H610498605
11_205715H41821455
11_205726H335738837
11_205735H626279780
11_205776H506194012
11_205804H569760181
11_20582Un313982
11_205833H361099781
11_205847H583502187
11_205852H494259017
11_205867H649997318
11_205902H733665592
11_205941H554604184
11_205953H11725096
11_205973H553610146
11_206006H182973407
11_206014H596555326
11_206022H122032984
11_206031H553490762
11_206064H17916482
11_206073H28024941
11_206092H846537
11_206104H472369069
11_206123H642592656
11_206171H22567867
11_206237H608261319
11_206251H523884637
11_206263H605214250
11_206283H601474414
11_206295H581323626
11_206312H445720209
11_206366H499364199
11_206375H582292797
11_206393H158707482
11_206421H451995800
11_206445H503177199
11_206455H518151226
11_206465H636606382
11_206473H44976265
11_206503H634853591
11_206516H165918717
11_20652Un247862021
11_206535H589787307
11_206546H536785563
11_206566H151845854
11_206571H484964797
11_206593H589721973
11_206601H329700313
11_206623H637942608
11_206663H44985662
11_206672H620951762
11_206684H646020727
11_206692H405862782
11_206704H595105468
11_206717H95639213
11_206736H502536025
11_206756H94715959
11_206765H612799248
11_206804H19087562
11_206812H760725228
11_206826H517882968
11_206865H644819915
11_206876H577508229
11_206894H599170288
11_206902H587894696
11_206917H641771557
11_206943H539948623
11_206953H549472604
11_206975H121363898
11_206981H317349096
11_206992H638242025
11_207005H144294205
11_207014H632600239
11_207076H47261864
11_207085H226630663
11_207096H491267764
11_207107H5664553
11_207112H716820240
11_207121H15607330
11_207135H479122439
11_207146H495778737
11_207152H731304950
11_207184H595205029
11_207193H62322435
11_207206H132308036
11_207227H19656144
11_207234H537437597
11_207242H19829130
11_20725Un92479210
11_207286H546608851
11_207295H26848667
11_207305H24876262
11_207324H608851343
11_207336H566150978
11_207342H631621499
11_207365H514827552
11_207375H361450925
11_207404H578447444
11_207423H17409777
11_207436H43584782
11_207446H509428370
11_207456H21803387
11_207466H521667884
11_207482H130322263
11_207491H12554537
11_207507H82213270
11_207546H342722323
11_207557H15830059
11_207571H272999970
11_207587H31373284
11_207615H11067596
11_207624H620025493
11_207654H601568256
11_207665H34998568
11_207691H507978931
11_207717H525908171
11_207721H557125644
11_207774H19930065
11_207783H548580014
11_207801H522487000
11_207812H649449314
11_207824H76087995
11_207836H541248677
11_207846H507569812
11_207856H324409952
11_207865H662131998
11_207903H185701965
11_207915H618538062
11_207921H504087501
11_207943H23309513
11_207955H557081865
11_207963H336499693
11_207973H2268898
11_207981H375902959
11_207996H335741736
11_208013H377137385
11_208055H562277989
11_208072H70385519
11_208087H591547771
11_208101H364313610
11_208154H580623354
11_208176H577736885
11_208204H534644921
11_208247H604233974
11_208265H642764922
11_208277H150246255
11_208287H270644774
11_208295H641065683
11_208332H615300103
11_208356H361066555
11_208384H617390305
11_208401H555426553
11_208415H107554231
11_208441H525478648
11_208455H24737426
11_208477H639793049
11_208486H507075509
11_208505H229928354
11_208513H656335837
11_208534H103852876
11_208546H325517744
11_208551H81225714
11_208563H331630913
11_208583H1006316
11_208622H515707162
11_208642H38834908
11_208663H169952332
11_20868Un93085224
11_208735H9866403
11_208765H635422638
11_208773H535783451
11_208797H223284528
11_208807H509844383
11_208816H486669
11_208826H6140512
11_208835H575093105
11_208845H602880581
11_208857H176154907
11_208866H5362408
11_208872H520778494
11_208896H522942050
11_208903H398402893
11_208912H126207525
11_208926H503880223
11_208937H242564744
11_208945H1070678
11_208952H727211279
11_208967H521711088
11_208975H657884383
11_209035H34677472
11_20904Un93753935
11_209052H175163828
11_209064H556824511
11_209081H536887344
11_209091H520489712
11_209117H336286542
11_209121H365007316
11_209151H555460522
11_209203H654767726
11_209211H522838398
11_209222H610747865
11_209232H684263618
11_209244H544139497
11_209292H94907751
11_209313H521561360
11_209345H638929788
11_209366H34020677
11_209394H50778111
11_209401H538661146
11_209432H747547911
11_209443H629156883
11_209466H340035678
11_209472H622777603
11_209511H1546179
11_209523H666221523
11_209533H4636404
11_209552H699187324
11_209561H455813887
11_209585H156370085
11_209591H533223547
11_209602H627657786
11_209615H405421298
11_209627H647000283
11_209683H24951816
11_209696H517938283
11_209703H259755368
11_209711H496660040
11_209726H547258865
11_209744H627962516
11_209757H84124546
11_209763H8913941
11_209805H24741544
11_209875H39805507
11_209885H640705320
11_209901H482441231
11_209937H34778348
11_209942H744819935
11_209953H487528331
11_209966H545781074
11_209971H418582669
11_209987H624767746
11_209993H599360206
11_210001H362148549
11_210015H501407456
11_210052H86580884
11_210072H674314269
11_210083H680228127
11_210104H512100746
11_210115H146141244
11_210125H648412894
11_210146H157298700
11_210152H31559962
11_210173H649906452
11_210185H636679883
11_210245H632099814
11_210256H541489037
11_210273H8709612
11_210306H32779707
11_210326H9846099
11_210354H633031207
11_210372H664191672
11_210381H537362806
11_210405H221906943
11_210415H629445913
11_210481H19370549
11_210507H20020715
11_210525H661973771
11_210531H403309609
11_210564H2800462
11_210571H478389125
11_210615H561550904
11_210623H333550523
11_210655H9600389
11_210671H1431785
11_210681H540586570
11_210696H229164917
11_210704H18337769
11_210714H82516525
11_210721H27636662
11_210734H66861565
11_210775H614629503
11_210782H624272301
11_210797H497303944
11_210833H607246063
11_210867H653393562
11_210874H526929258
11_210882H720580161
11_210933H76088289
11_210942H560844140
11_210951H37694302
11_210962H94760649
11_210986H514236644
11_210992H755094798
11_211013H64674445
11_211037H582767743
11_211047H632318636
11_211085H663400890
11_211093H160752469
11_211102H581251463
11_211114H623900388
11_211126H578734148
11_211165H86036493
11_211203H507024435
11_211215H481701687
11_211224H25916241
11_211246H288957353
11_211252H722486571
11_211261H479986322
11_211293H201162978
11_211304H635114380
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11_211341H39019703
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11_211415H650559496
11_211422H729751285
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11_211473H370217565
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11_211514H599525496
11_211532H53709229
11_211555H659838844
11_211562H626124394
11_211586H138342246
11_211607H634620797
11_211613H617523850
11_211625H662638435
11_211633H560934688
11_211662H579380380
11_211685H558753262
11_211737H580289771
11_211741H7137635
11_211752H677845247
11_211775H595416742
11_211787H440067104
11_211812H631832715
11_211842H698444137
11_211872H35769464
11_21188Un246573090
11_211893H64618663
11_211903H7598613
11_21191Un52769203
11_211921H496080353
11_211931H324191509
11_211973H430795973
11_212005H439204511
11_212017H580563012
11_212025H4183705
11_212035H589777207
11_212046H7923837
11_212052H619885222
11_212075H24346237
11_212097H629621950
11_212104H634781955
11_212123H617339425
11_212155H273898900
11_212166H326574538
11_212171H379465848
11_212191H458916428
11_212202H711230478
11_212215H3766117
11_212237H641762860
11_212246H524652121
11_21225Un89985694
11_212261H7228966
11_212284H3692366
11_212297H628369772
11_212382H702094708
11_212395H482752631
11_212415H600459885
11_212422H645576216
11_212434H618502745
11_212445H437938877
11_212452H659247101
11_212466H16478005
11_212475H595204884
11_212502H742246932
11_212512H615045226
11_212535H31032251
11_212544H76591117
11_212566H509626192
11_212582H610741736
11_212593H48467899
11_212605H371780738
11_212612H34355312
11_212652H34864969
11_212663H666091295
11_212673H687549675
11_212707H84514028
11_212716H560160262
11_212723H667178220
11_212734H526354949
11_212742H732688792
11_212755H480698266
11_212773H620572155
11_212807H641309802
11_212816H38242974
11_212862H210132420
11_212895H605366618
11_212916H575771489
11_212936H471353908
11_212943H585261706
11_212964H526146943
11_212975H618532841
11_212986H465306312
11_212992H748462204
11_213007H464075673
11_213027H351911775
11_213034H464028169
11_213042H42238196
11_213077H4122880
11_213085H80754687
11_213095H498937976
11_213106H441812706
11_213121H355284988
11_213145H558194881
11_213152H712801076
11_213215H558827272
11_213245H14016590
11_213255H591634038
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In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.