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  T3 Barley Sandbox

Genomic Analysis Tools

These analysis tools use the R package rrBLUP version 4.2
rrBLUP is available at The Comprehensive R Archive Network

y = X β + Ζ g + ε y = observations
Z = Design matrix for the random effects
X = Design matrix for fixed effects
The trial is always included as a fixed effect.
Principal components can also be added as a fixed effect.

Genome Wide Association (GWAS) Genomic Prediction