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Genotyping experiment VC_MNWC3_2013_384

Description

Experiment Short NameVC_MNWC3
PlatformVeraCode
Data ProgramUSDA-ARS Raleigh, NC (NCG)
Breeding ProgramUniversity of Minnesota - Agronomy (MN)
OPA NameLTT_384_VC
Processing Date2/15/2013
SoftwareIllumina Genome Studio
Software version2010.3
Comments

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384 markers were assayed for 287 lines.
(lines and markers)

Removed by filteringRemaining
78 markers have a minor allele frequency (MAF) less than 5%
34 markers are missing more than 10% of data
91 markers removed
293 markers

Maximum Missing Data: %     Minimum MAF: %    



Additional files available

Samples (germplasm lines)MNS13001-3 sample sheet_FINAL.csv
Manifest (markers used)
Cluster FileVC0013197_OPA_LTTcycle3.EGT
Raw data

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

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