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  T3 Barley Sandbox

Genotyping experiment VC_MNSC2_2011_384

Description

Experiment Short NameVC_MNSC2
PlatformVeraCode
Data ProgramUSDA-ARS Fargo, ND (NDG)
Breeding ProgramUniversity of Minnesota - Agronomy (MN)
OPA NameFHB_384_VC
Processing Date9/30/2011
SoftwareIllumina Genome Studio
Software version2010.3
CommentsMN Spring Barley Genomic Selection Cycle 2 with Custom 384 SNP Veracode assay (Spring VC assay #1)

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384 markers were assayed for 1920 lines.
(lines and markers)

Removed by filteringRemaining
30 markers have a minor allele frequency (MAF) less than 5%
7 markers are missing more than 10% of data
30 markers removed
354 markers

Maximum Missing Data: %     Minimum MAF: %    



Additional files available

Samples (germplasm lines)MNS2011VC_001-020.csv
Manifest (markers used)VC0013194-OPA
Cluster Fileunknown
Raw data

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

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