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Genotyping experiment POPA2_Steptoe-Morex_Mapping

Description

Experiment Short NameSM_All_POPA2
PlatformGoldenGate
Data ProgramUC Riverside Close Lab (UCR)
Breeding ProgramMapping: Steptoe-Morex (SM)
OPA NamePOPA2
Processing Date3/18/2008
SoftwareIllumina GenomeStudio
Software version2010.3
Comments

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3072 markers were assayed for 153 lines.
(lines and markers)

Removed by filteringRemaining
2265 markers have a minor allele frequency (MAF) less than 5%
479 markers are missing more than 10% of data
2280 markers removed
398 markers

Maximum Missing Data: %     Minimum MAF: %    



Additional files available

Samples (germplasm lines)POPA2_samplesheet_03182008.csv
Manifest (markers used)GS0007186-OPA.opa
Cluster FilePOPA2_BS_060920_070522_080318.EGT
Raw dataPOPA2_SM_1565313057_POPA2_SM_1681952079.zip

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