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  T3 Barley Sandbox

Genotyping experiment POPA2_CAPcore

Description

Experiment Short NameCC_POPA2_Mapping
PlatformGoldenGate
Data ProgramUSDA-ARS Fargo, ND (NDG)
Breeding ProgramMapping: CapCore (CC)
OPA NamePOPA2
Processing Date3/18/2008
SoftwareIllumina GenomeStudio
Software version2010.3
Comments

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1536 markers were assayed for 96 lines.
(lines and markers)

Removed by filteringRemaining
558 markers have a minor allele frequency (MAF) less than 5%
285 markers are missing more than 10% of data
613 markers removed
923 markers

Maximum Missing Data: %     Minimum MAF: %    



Additional files available

Samples (germplasm lines)POPA2_samplesheet_03182008.csv
Manifest (markers used)GS0007186-OPA.opa
Cluster FilePOPA2_BS_060920_070522_080318.EGT
Raw dataPOPA2_CC_1566321027.zip

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

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