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Genotyping experiment POPA1_Steptoe_Morex_Mapping

Description

Experiment Short NameSM_POPA1
PlatformGoldenGate
Data ProgramUC Riverside Close Lab (UCR)
Breeding ProgramMapping: Steptoe-Morex (SM)
OPA NamePOPA1-1
Processing Date2006
SoftwareIllumina GenomeStudio
Software version2010.3
Comments

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1524 markers were assayed for 152 lines.
(lines and markers)

Removed by filteringRemaining
1089 markers have a minor allele frequency (MAF) less than 5%
149 markers are missing more than 10% of data
1089 markers removed
435 markers

Maximum Missing Data: %     Minimum MAF: %    



Additional files available

Samples (germplasm lines)pilot_opa1_master_sample sheet.csv
Manifest (markers used)GS0006616-OPA1.opa
Cluster FilePilot_OPA1_BS_061127_070420_080317.EGT
Raw dataPOPA1-1_SM_1353887_1353879_1519091015.zip

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