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  T3 Barley Sandbox

Genotyping experiment POPA1_Oregon_Wolf_Barley_Mapping

Description

Experiment Short NameOWB_POPA1
PlatformGoldenGate
Data ProgramUC Riverside Close Lab (UCR)
Breeding ProgramMapping: Oregon Wolfe Barley (OWB)
OPA NamePOPA1-1
Processing Date2006
SoftwareIllumina GenomeStudio
Software version2010.3
Comments

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1524 markers were assayed for 95 lines.
(lines and markers)

Removed by filteringRemaining
954 markers have a minor allele frequency (MAF) less than 5%
151 markers are missing more than 10% of data
955 markers removed
569 markers

Maximum Missing Data: %     Minimum MAF: %    



Additional files available

Samples (germplasm lines)pilot_opa1_master_sample sheet.csv
Manifest (markers used)GS0006616-OPA1.opa
Cluster FilePilot_OPA1_BS_061127_070420_080317.EGT
Raw dataPOPA1-1_OWB_1348324.zip

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

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