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  T3 Barley Sandbox

Genotyping experiment POPA1_Morex-Barke_Mapping

Description

Experiment Short NameMB_POPA1
PlatformGoldenGate
Data ProgramUC Riverside Close Lab (UCR)
Breeding ProgramMapping: Morex-Barke (MB)
OPA NamePOPA1-1
Processing Date2006
SoftwareIllumina GenomeStudio
Software version2010.3
Comments

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1524 markers were assayed for 96 lines.
(lines and markers)

Removed by filteringRemaining
999 markers have a minor allele frequency (MAF) less than 5%
145 markers are missing more than 10% of data
999 markers removed
525 markers

Maximum Missing Data: %     Minimum MAF: %    



Additional files available

Samples (germplasm lines)pilot_opa1_master_sample sheet.csv
Manifest (markers used)GS0006616-OPA1.opa
Cluster FilePilot_OPA1_BS_061127_070420_080317.EGT
Raw dataPOPA1-1_MB_1338450.zip

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