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  T3 Barley Sandbox

Genotyping experiment POPA1-2_CAPcore

Description

Experiment Short NameCC_POPA1
PlatformGoldenGate
Data ProgramUSDA-ARS Fargo, ND (NDG)
Breeding ProgramMapping: CapCore (CC)
OPA NamePOPA1-2
Processing Date2006
SoftwareIllumina GenomeStudio
Software version2010.3
Comments

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1524 markers were assayed for 104 lines.
(lines and markers)

Removed by filteringRemaining
535 markers have a minor allele frequency (MAF) less than 5%
167 markers are missing more than 10% of data
554 markers removed
970 markers

Maximum Missing Data: %     Minimum MAF: %    



Additional files available

Samples (germplasm lines)master_Sample_Sheet_Barley_Pilot_plate1.csv
Manifest (markers used)GS0007298-OPA.opa
Cluster Filechao_resysnth_popa1_BS_prb_070403_20080610.EGT
Raw dataPOPA1_CC_1669291006_1725855016.zip

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

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