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  T3 Barley Sandbox

Genotyping experiment BOPA1_MN_WB_2011


Experiment Short NameBOPA1_MN_WB
PlatformInfinium 9K
Data ProgramUSDA-ARS Fargo, ND (NDG)
Breeding ProgramUniversity of Minnesota - Agronomy (MN)
OPA Namen/a
Processing Date7/7/2011
SoftwareIllumina Genome Studio
Software version2010.3


3072 markers were assayed for 58 lines.
(lines and markers)

Removed by filteringRemaining
166 markers have a minor allele frequency (MAF) less than 5%
112 markers are missing more than 10% of data
212 markers removed
1430 markers

Maximum Missing Data: %     Minimum MAF: %    

Additional files available

Samples (germplasm lines)
Manifest (markers used)GS0007511-OPA.opa
Cluster File
Raw data

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

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