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  T3 Barley Sandbox

Genotyping experiment 2018_NDSU_Yuma_2R


Experiment Short Name2018N2YUMA
PlatformInfinium 9K
Data ProgramUSDA-ARS Fargo, ND (NDG)
Breeding ProgramNorth Dakota State (NDSU 2-Row) (N2)
Processing Date3/15/18
SoftwareIllumina Genome Studio
Software version2010.3


462 markers were assayed for 2100 lines.
(lines and markers)

Removed by filteringRemaining
169 markers have a minor allele frequency (MAF) less than 5%
53 markers are missing more than 10% of data
192 markers removed
270 markers

Maximum Missing Data: %     Minimum MAF: %    

Additional files available

Samples (germplasm lines)NDSU Sample Sheet_2018N2Yuma.csv
Manifest (markers used)iSelect_barley_11491263_A.bpm
Cluster FileTCAPbarley9K_080811.egt
Raw data

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

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