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  T3 Barley Sandbox

Genotyping experiment 2011_9K_NB_allplates

Description

Experiment Short NameBarleyNB_9K
PlatformInfinium 9K
Data ProgramUSDA-ARS Fargo, ND (NDG)
Breeding ProgramNSGC Barley (NB)
OPA Namen/a
Processing Date08/09/2011
SoftwareIllumina Genome Studio
Software version2010.3
Comments

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6913 markers were assayed for 2417 lines.
(lines and markers)

Removed by filteringRemaining
314 markers have a minor allele frequency (MAF) less than 5%
162 markers are missing more than 10% of data
464 markers removed
6449 markers

Maximum Missing Data: %     Minimum MAF: %    



Additional files available

Samples (germplasm lines)barleyNSGC9K_samplesheet_rev.csv
Manifest (markers used)iSelect_barley_11491263_A.bpm
Cluster FileTCAPbarley9K_080811.egt
Raw data

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.