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  T3 Barley Sandbox

Genotyping experiment 2011BOPA1_MN_WC0

Description

Experiment Short NameMN_GSWC0
PlatformGoldenGate
Data ProgramUniversity of Minnesota - Agronomy (MN)
Breeding ProgramUniversity of Minnesota - Agronomy (MN)
OPA NameBOPA1
Processing Date7/7/2011
SoftwareIllumina Genome Studio
Software version2010.3
CommentsMinnesota Genomic Selection Winter (Program) Cycle Zero; the establishing parents for the MN Winter program genomic selection breeding cycles

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1536 markers were assayed for 45 lines.
(lines and markers)

Removed by filteringRemaining
68 markers have a minor allele frequency (MAF) less than 5%
56 markers are missing more than 10% of data
92 markers removed
1444 markers

Maximum Missing Data: %     Minimum MAF: %    



Additional files available

Samples (germplasm lines)
Manifest (markers used)GS0007511-OPA.opa
Cluster File
Raw data

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

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