T3 Barley Sandbox

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What's New

Phenotype data
Six additional phenotype trials from the North American Barley Scab Evaluation Nursery (NABSEN) have now been uploaded from Fargo, ND, and Langdon, ND (2014-2016).
Data Selection
Physical Map added for IBSC 2016 assembly.
Data Analysis Tools
BLAST database and JBrowse for IBSC 2016 assembly.
GWAS results updated to include EMBL-EBI expression data.
GWAS results updated to include Plant Reactome Pathways

Genotyping experiment 2009BOPA2_MN_Plate3

Description

Experiment Short Name	MN_BOPA2
Platform	GoldenGate
Data Program	USDA-ARS Fargo, ND (NDG)
Breeding Program	University of Minnesota - Agronomy (MN)
OPA Name	BOPA2
Processing Date	04/16/2010
Software	Illumina Genome Studio
Software version	2010.3
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0 markers were assayed for 0 lines.

Removed by filtering (description)	Remaining
0 markers have a minor allele frequency (MAF) less than 5% 0 markers are missing more than 10% of data 0 markers removed	0 markers
lines are missing more than 10% of data	0 lines

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Maximum Missing Data: % Minimum MAF: %

Additional files available

Samples (germplasm lines)	2009CAPplate3MNSampleSheetBOPA2rev.csv
Manifest (markers used)	GS0010598-OPA.opa
Cluster File	BOPA2PooledSamples2009.EGT
Raw data

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.