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  T3 Barley Sandbox

Genotyping experiment 2009BOPA1_OR_Plate2

Description

Experiment Short NameOR_BOPA1
PlatformGoldenGate
Data ProgramUSDA-ARS Fargo, ND (NDG)
Breeding ProgramOregon State University (OSU)
OPA NameBOPA1
Processing Date03/17/2010
SoftwareIllumina Genome Studio
Software version2010.3
Comments

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3072 markers were assayed for 96 lines.
(lines and markers)

Removed by filteringRemaining
1196 markers have a minor allele frequency (MAF) less than 5%
246 markers are missing more than 10% of data
1212 markers removed
1860 markers

Maximum Missing Data: %     Minimum MAF: %    



Additional files available

Samples (germplasm lines)Sample_Sheet_2009plate2OR.csv
Manifest (markers used)GS0007511-OPA.opa
Cluster FileBOPA1PooledSamples2009.EGT
Raw data

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.